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Oat ornithine aminotransferase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771896, updated on 8-Mar-2024

Summary

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Gene symbol
Oat
Gene description
ornithine aminotransferase
See related
Ensembl:ENSCGRG00015001903
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Oat in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614349.1 (709164..727843)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (68272487..68291567)

NW_003614349.1Genomic Context describing neighboring genes Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene family with sequence similarity 53 member B Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase Neighboring gene uncharacterized LOC107978977

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ornithine aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine catabolic process to proline via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ornithine aminotransferase, mitochondrial
Names
Ornithine aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614349.1 Reference CriGri_1.0 Primary Assembly

    Range
    709164..727843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007647853.4 → XP_007646043.1  ornithine aminotransferase, mitochondrial

    See identical proteins and their annotated locations for XP_007646043.1

    UniProtKB/TrEMBL
    G3HVE0
    Conserved Domains (2) summary
    TIGR00707
    Location:54 → 436
    argD; transaminase, acetylornithine/succinylornithine family
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

  2. XM_003507286.5 → XP_003507334.1  ornithine aminotransferase, mitochondrial

    See identical proteins and their annotated locations for XP_003507334.1

    UniProtKB/TrEMBL
    G3HVE0
    Conserved Domains (2) summary
    TIGR00707
    Location:54 → 436
    argD; transaminase, acetylornithine/succinylornithine family
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    68272487..68291567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027409144.2 → XP_027264945.1  ornithine aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A9J7FTZ7
    Related
    ENSCGRP00015002343.1, ENSCGRT00015002910.2
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

  2. XM_035442159.1 → XP_035298050.1  ornithine aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A9J7FTZ7
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

  3. XM_027409146.2 → XP_027264947.1  ornithine aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A9J7FTZ7
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

  4. XM_027409145.2 → XP_027264946.1  ornithine aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A9J7FTZ7
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase
Nucleotide Protein Strain
Heading Accession and Version

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