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Colgalt1 collagen beta(1-O)galactosyltransferase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100774081, updated on 8-Mar-2024

Summary

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Gene symbol
Colgalt1
Gene description
collagen beta(1-O)galactosyltransferase 1
See related
Ensembl:ENSCGRG00015004422
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Glt25d1
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613716.1 (1293372..1309298, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (247983873..247997303)

NW_003613716.1Genomic Context describing neighboring genes Neighboring gene insulin like 3 Neighboring gene Janus kinase 3 Neighboring gene unc-13 homolog A Neighboring gene niban apoptosis regulator 3 Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1
Names
glycosyltransferase 25 domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613716.1 Reference CriGri_1.0 Primary Assembly

    Range
    1293372..1309298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007638566.2 → XP_007636756.2  procollagen galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MF20
    Conserved Domains (2) summary
    cl01298
    Location:339 → 506
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    pfam13704
    Location:55 → 169
    Glyco_tranf_2_4; Glycosyl transferase family 2

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    247983873..247997303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035450403.1 → XP_035306294.1  procollagen galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MF20, A0A9J7HA85
    Related
    ENSCGRP00015005708.1, ENSCGRT00015007037.2
    Conserved Domains (2) summary
    cl01298
    Location:334 → 519
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    pfam13704
    Location:55 → 169
    Glyco_tranf_2_4; Glycosyl transferase family 2
Nucleotide Protein Strain
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