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Catsperb cation channel sperm associated auxiliary subunit beta [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910102, updated on 8-Mar-2024

Summary

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Symbol
Catsperbprovided by RGD
Full Name
cation channel sperm associated auxiliary subunit betaprovided by RGD
Primary source
RGD:6500065
See related
Ensembl:ENSRNOG00000063175 AllianceGenome:RGD:6500065
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in cilium. Predicted to be part of CatSper complex. Orthologous to human CATSPERB (cation channel sperm associated auxiliary subunit beta). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 96.5) See more
Orthologs
human mouse all
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Genomic context

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See Catsperb in Genome Data Viewer
Location:
6q32
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (126148156..126526814, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (120418606..120713160, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (125153124..125391303, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene kinesin family member 4B Neighboring gene U6 spliceosomal RNA Neighboring gene neugrin-like Neighboring gene glucose-6-phosphate dehydrogenase, pseudogene 1 Neighboring gene neugrin, neurite outgrowth associated, pseudogene 1 Neighboring gene neugrin, neurite outgrowth associated, pseudogene 2 Neighboring gene uncharacterized LOC134479250 Neighboring gene tandem C2 domains, nuclear Neighboring gene fibulin 5 Neighboring gene thyroid hormone receptor interactor 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. CatSperbeta, a novel transmembrane protein in the CatSper channel complex. Liu J, et al. J Biol Chem, 2007 Jun 29. PMID 17478420
  2. A novel gene required for male fertility and functional CATSPER channel formation in spermatozoa. Chung JJ, et al. Nat Commun, 2011 Jan 11. PMID 21224844, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
part_of CatSper complex ISO
Inferred from Sequence Orthology
more info
  
located_in cilium ISO
Inferred from Sequence Orthology
more info
  
located_in sperm principal piece ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
cation channel sperm associated auxiliary subunit beta; cation channel sperm-associated auxiliary subunit beta
Names
cation channel sperm-associated protein subunit beta
cation channel sperm-associated protein subunit beta-like
catsper channel auxiliary subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    126148156..126526814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262696.1 → XP_063118766.1  cation channel sperm-associated auxiliary subunit beta isoform X1

  2. XM_063262695.1 → XP_063118765.1  cation channel sperm-associated auxiliary subunit beta isoform X1

  3. XM_063262697.1 → XP_063118767.1  cation channel sperm-associated auxiliary subunit beta isoform X2

  4. XM_063262698.1 → XP_063118768.1  cation channel sperm-associated auxiliary subunit beta isoform X3

  5. XM_063262699.1 → XP_063118769.1  cation channel sperm-associated auxiliary subunit beta isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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