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LOC100910497 paired immunoglobulin-like type 2 receptor alpha-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910497, updated on 29-Feb-2024

Summary

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Symbol
LOC100910497provided by RGD
Full Name
paired immunoglobulin-like type 2 receptor alpha-likeprovided by RGD
Primary source
RGD:6498401
See related
Ensembl:ENSRNOG00000050059 AllianceGenome:RGD:6498401
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 164.9), Lung (RPKM 74.3) and 6 other tissues See more
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Genomic context

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Location:
12q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (24505901..24518093)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (18866301..18881290)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (21931587..21950593)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene RAP1B, member of RAS oncogene family, pseudogene 3 Neighboring gene paired immunoglobin like type 2 receptor beta 2 like 7 Neighboring gene zinc finger CW-type and PWWP domain containing 1 Neighboring gene methylphosphate capping enzyme Neighboring gene protein phosphatase 1, regulatory subunit 35 Neighboring gene sperm acrosome developmental regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
paired immunoglobulin-like type 2 receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    24505901..24518093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090051.2 → XP_038945979.1  paired immunoglobulin-like type 2 receptor alpha isoform X2

    UniProtKB/TrEMBL
    M0R4W2
    Conserved Domains (1) summary
    cl11960
    Location:30 → 142
    Ig; Immunoglobulin domain

  2. XM_063271780.1 → XP_063127850.1  paired immunoglobulin-like type 2 receptor alpha isoform X3

  3. XM_039090050.2 → XP_038945978.1  paired immunoglobulin-like type 2 receptor alpha isoform X1

    UniProtKB/TrEMBL
    F1M5V8, M0R4W2
    Related
    ENSRNOP00000035136.6
    Conserved Domains (2) summary
    cd00096
    Location:28 → 32
    Ig; Ig strand A [structural motif]
    cl11960
    Location:32 → 144
    Ig; Immunoglobulin domain

  4. XM_063271781.1 → XP_063127851.1  paired immunoglobulin-like type 2 receptor alpha isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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