LOC100910755 RUN and FYVE domain-containing protein 2-like [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: LOC100910755provided by RGD
Full Name: RUN and FYVE domain-containing protein 2-likeprovided by RGD
Primary source: RGD:6497270
Gene type: protein coding
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information: Note: LOC100910755 represents a likely duplicate placement of Rufy2 annotated on Rnor_6.0 but not on Rn_Celera (Annotation Release 105). Additionally, annotation of LOC100910755 not supported by synteny in mouse and human. BLASTing LOC100910755 XM_008772949.1 and Rufy2 NM_001168586.1 against the rat genome shows best hits to NC_005119.4 on Rnor_6.0 at locations where LOC100910755 and Rufy2 (GeneID: 690777) are annotated and to AC_000088.1 on Rn_Celera only at location where Rufy2 is annotated (Annotation Release 105). 2-seqence BLAST of Rufy2 NM_001168586.1 against LOC100910755 XM_008772949.1 shows high sequence identity (96% coverage, 99% identity). Rufy2 and most of LOC100910755 are present on the same component AABR07044935.1, with the 3' end of LOC100910755 on component AABR07044934.1. 2-sequence BLAST of AABR07044935.1 against AABR07044934.1 shows 99% identity across a stretch of ~16 kb. [25 Mar 2015]
Expression: Biased expression in Brain (RPKM 77.7), Kidney (RPKM 54.8) and 9 other tissues See more
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Genomic context

Location:: 20q11

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
106	latest, but not current	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (27180217..27211779, complement)

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_005119.4 Chromosome 20 Reference Rnor_6.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016