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Znf865 zinc finger protein 865 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911196, updated on 13-Apr-2024

Summary

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Official Symbol
Znf865provided by RGD
Official Full Name
zinc finger protein 865provided by RGD
Primary source
RGD:6494165
See related
Ensembl:ENSRNOG00000028628 AllianceGenome:RGD:6494165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human ZNF865 (zinc finger protein 865). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 36.4), Thymus (RPKM 35.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Znf865 in Genome Data Viewer
Location:
1q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (77839504..77853507, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (68810664..68824652, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72362242..72374599, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 865 Neighboring gene zinc finger protein 524 Neighboring gene FLT3-interacting zinc finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 865

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401756.1 → NP_001388685.1  zinc finger protein 865

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZTV8
    Related
    ENSRNOP00000082286.1, ENSRNOT00000107242.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    77839504..77853507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284309.1 → XP_063140379.1  zinc finger protein 865 isoform X5

  2. XM_039100562.2 → XP_038956490.1  zinc finger protein 865 isoform X2

    Conserved Domains (5) summary
    PHA03378
    Location:142 → 328
    PHA03378; EBNA-3B; Provisional
    COG5048
    Location:328 → 400
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:527 → 547
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:540 → 563
    zf-H2C2_2; Zinc-finger double domain

  3. XM_063284300.1 → XP_063140370.1  zinc finger protein 865 isoform X4

    UniProtKB/TrEMBL
    A6KNR3, M0R740

  4. XM_017589961.3 → XP_017445450.1  zinc finger protein 865 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZTV8
    Conserved Domains (5) summary
    PHA03378
    Location:163 → 349
    PHA03378; EBNA-3B; Provisional
    COG5048
    Location:349 → 421
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:548 → 568
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:441 → 461
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:561 → 584
    zf-H2C2_2; Zinc-finger double domain

  5. XM_008759010.3 → XP_008757232.1  zinc finger protein 865 isoform X3

    See identical proteins and their annotated locations for XP_008757232.1

    Related
    ENSRNOP00000065258.3
    Conserved Domains (6) summary
    COG5048
    Location:381 → 453
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:473 → 493
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:252 → 274
    zf-C2H2; Zinc finger, C2H2 type
    pfam12446
    Location:304 → 380
    DUF3682; Protein of unknown function (DUF3682)
    pfam13465
    Location:593 → 615
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_350148.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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