LOC100911486 multiple epidermal growth factor-like domains protein 6-like [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: LOC100911486provided by RGD
Full Name: multiple epidermal growth factor-like domains protein 6-likeprovided by RGD
Primary source: RGD:6492904
Gene type: protein coding
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information: Note: LOC100911486 appears to be a duplicate placement of Megf6 (GeneID: 65049) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. BLASTing LOC100911486 XM_008764417.1 and Megf6 NM_022955.1 against the rat genome shows best hits to NC_005104.4 on Rnor_6.0 at locations where LOC100911486 and Megf6 are annotated and to AC_000073.1 on Rn_Celera only at location where Megf6 is annotated (Annotation Release 105). 2-sequence BLAST of Megf6 NM_022955.1 against LOC100911486 XM_008764417.1 shows high sequence identity (79% coverage, 99% identity). Although five components underlie LOC100911486, AABR07050625.1 includes the genomic region with the majority of exons that comprise XM_008764417.1. BLASTing AABR07050625.1 against the rat genome shows best hits to NC_005104.4 on Rnor_6.0 at the location where LOC100911486 is annotated (hitting itself) and the location where Megf6 is annotated. 2-sequence BLAST of AABR07050625.1 against Megf6 underlying component AABR07050628.1 shows 99% sequence identity across stretch of ~25 kb. [26 Mar 2015]
Expression: Biased expression in Lung (RPKM 90.4), Heart (RPKM 19.0) and 8 other tissues See more
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Genomic context

Location:: 5q36

Exon count:: 35

Annotation release	Status	Assembly	Chr	Location
106	latest, but not current	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (171478247..171571810)

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_005104.4 Chromosome 5 Reference Rnor_6.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016