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LOC100911660 lymphocyte-specific helicase-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911660, discontinued on 6-Mar-2021

Summary

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Symbol
LOC100911660provided by RGD
Full Name
lymphocyte-specific helicase-likeprovided by RGD
Primary source
RGD:6491699
Gene type
protein coding
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information
Note: LOC100911660 appears to be a duplicate placement of Hells (GeneID: 294071) on Rnor_6.0 (Annot. Release 105) that is absent from Rn_Celera and is not supported by syntenic regions in mouse and human. BLAST analysis of the underlying component AABR07072049.1 against the rat genome shows high sequence identity (99% identity) with part of NC_005100.4 on which Hells is annotated. Annotation of Hells at this location on Rnor_6.0 is supported by annotation on Rn_Celera and synteny with mouse and human. BLAST analysis of LOC100911660 underlying component AABR07072049.1 against Hells underlying component AC083911.11 shows high sequence identity (90% coverage, 99% identity) further supporting duplicate placement of this gene. [10 Mar 2015]
Expression
Biased expression in Thymus (RPKM 137.2), Spleen (RPKM 101.7) and 9 other tissues See more
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Genomic context

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Location:
1q53
Exon count:
23
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (257614688..257660184)
106 latest, but not current Rn_Celera (GCF_000002265.2) 1 AC_000069.1 (233793070..233838208)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Names
lymphocyte-specific helicase-like
lymphoid-specific helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    257614688..257660184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590353.1 → XP_017445842.1  

  2. XM_008760387.2 → XP_008758609.1  

  3. XM_008760388.2 → XP_008758610.1  

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    233793070..233838208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017589518.1 → XP_017445007.1  

  2. XM_017589514.1 → XP_017445003.1  

  3. XM_017589521.1 → XP_017445010.1  

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