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LINC01752 long intergenic non-protein coding RNA 1752 [ Homo sapiens (human) ]

Gene ID: 101929395, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01752provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1752provided by HGNC
Primary source
HGNC:HGNC:52540
See related
AllianceGenome:HGNC:52540
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 5.7), prostate (RPKM 1.3) and 2 other tissues See more
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Genomic context

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Location:
20p12.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (10753090..10754027)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (10796104..10797041)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (10733738..10734675)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene SLX4 interacting protein Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:10617378-10618174 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:10618175-10618971 Neighboring gene DNAJC9 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:10621299-10622074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:10622075-10622850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12672 Neighboring gene Sharpr-MPRA regulatory region 15707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12673 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12675 Neighboring gene microRNA 6870 Neighboring gene jagged canonical Notch ligand 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:10686119-10687318 Neighboring gene uncharacterized LOC107985398 Neighboring gene VISTA enhancer hs1278 Neighboring gene MPRA-validated peak4147 silencer Neighboring gene uncharacterized LOC101929413 Neighboring gene FAT atypical cadherin 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110611.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL135937

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    10753090..10754027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    10796104..10797041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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