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Snapc2 small nuclear RNA activating complex, polypeptide 2 [ Mus musculus (house mouse) ]

Gene ID: 102209, updated on 30-Apr-2024

Summary

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Official Symbol
Snapc2provided by MGI
Official Full Name
small nuclear RNA activating complex, polypeptide 2provided by MGI
Primary source
MGI:MGI:1914861
See related
Ensembl:ENSMUSG00000011837 AllianceGenome:MGI:1914861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
0610007H10Rik
Summary
Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nuclear body. Is expressed in several structures, including 1st branchial arch; egg cylinder; genitourinary system; limb; and sensory organ. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 32.8), adrenal adult (RPKM 22.7) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Snapc2 in Genome Data Viewer
Location:
8 A1.1; 8 1.99 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (4303102..4306220)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (4253102..4256220)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 7 Neighboring gene transforming growth factor, beta receptor III-like Neighboring gene cortexin 1 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene STARR-positive B cell enhancer ABC_E4988

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  5. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in snRNA transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in nuclear body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
snRNA-activating protein complex subunit 2
Names
SNAPc 45 kDa subunit
SNAPc subunit 2
snRNA-activating protein complex 45 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133968.1 → NP_598729.1  snRNA-activating protein complex subunit 2

    See identical proteins and their annotated locations for NP_598729.1

    Status: PROVISIONAL

    Source sequence(s)
    BC011147
    Consensus CDS
    CCDS22081.1
    UniProtKB/Swiss-Prot
    Q3UK17, Q8CBS9, Q91XA5
    Related
    ENSMUSP00000011981.4, ENSMUST00000011981.5
    Conserved Domains (1) summary
    pfam11035
    Location:1 → 355
    SnAPC_2_like; Small nuclear RNA activating complex subunit 2, SNAP190 Myb

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    4303102..4306220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508683.5 → XP_006508746.1  snRNA-activating protein complex subunit 2 isoform X1

    Conserved Domains (1) summary
    pfam11035
    Location:6 → 276
    SnAPC_2_like; Small nuclear RNA activating complex subunit 2, SNAP190 Myb
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91XA5.1 GenPept UniProtKB/Swiss-Prot:Q91XA5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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