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Bivm basic, immunoglobulin-like variable motif containing [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548228, updated on 11-Apr-2024

Summary

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Official Symbol
Bivmprovided by RGD
Official Full Name
basic, immunoglobulin-like variable motif containingprovided by RGD
Primary source
RGD:1311888
See related
Ensembl:ENSRNOG00000022894 AllianceGenome:RGD:1311888
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human BIVM (basic, immunoglobulin-like variable motif containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 87.0), Adrenal (RPKM 78.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Bivm in Genome Data Viewer
Location:
9q22
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (53760885..53797125)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (46268758..46305038)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (50884888..50921133)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 168 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene methyltransferase like 21C-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naïve to therapy. Pieragostino D, et al. Mol Biosyst, 2013 Jun. PMID 23580065
  2. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
basic immunoglobulin-like variable motif-containing protein
Names
rCG22223-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305447.1 → NP_001292376.1  basic immunoglobulin-like variable motif-containing protein

    See identical proteins and their annotated locations for NP_001292376.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A6INS5, D4A204
    Related
    ENSRNOP00000033781.5, ENSRNOT00000033133.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    53760885..53797125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244874.5 → XP_006244936.1  basic immunoglobulin-like variable motif-containing protein isoform X2

    See identical proteins and their annotated locations for XP_006244936.1

    UniProtKB/TrEMBL
    A6INS5, D4A204

  2. XM_017596228.3 → XP_017451717.1  basic immunoglobulin-like variable motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A6INS5, D4A204

  3. XM_006244881.5 → XP_006244943.2  basic immunoglobulin-like variable motif-containing protein isoform X1

  4. XM_039082902.2 → XP_038938830.1  basic immunoglobulin-like variable motif-containing protein isoform X3

  5. XM_039082901.2 → XP_038938829.1  basic immunoglobulin-like variable motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A6INS5, D4A204

  6. XM_006244876.2 → XP_006244938.1  basic immunoglobulin-like variable motif-containing protein isoform X2

    See identical proteins and their annotated locations for XP_006244938.1

    UniProtKB/TrEMBL
    A6INS5, D4A204

  7. XM_008767063.4 → XP_008765285.1  basic immunoglobulin-like variable motif-containing protein isoform X4

    See identical proteins and their annotated locations for XP_008765285.1

RNA

  1. XR_005488841.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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