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Chd9 chromodomain helicase DNA binding protein 9 [ Mus musculus (house mouse) ]

Gene ID: 109151, updated on 8-May-2024

Summary

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Official Symbol
Chd9provided by MGI
Official Full Name
chromodomain helicase DNA binding protein 9provided by MGI
Primary source
MGI:MGI:1924001
See related
Ensembl:ENSMUSG00000056608 AllianceGenome:MGI:1924001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AD013; PRIC320; mKIAA0308; 1810014J18Rik; 9030205D12Rik; A330063D19Rik
Summary
Predicted to enable several functions, including ATP binding activity; ATP-dependent activity, acting on DNA; and DNA binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and nucleoplasm. Orthologous to human CHD9 (chromodomain helicase DNA binding protein 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E14 (RPKM 3.2), whole brain E14.5 (RPKM 3.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Chd9 in Genome Data Viewer
Location:
8 C4; 8 44.25 cM
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (91554930..91781144)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (90828302..91054516)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35963 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93319223-93319524 Neighboring gene STARR-seq mESC enhancer starr_22282 Neighboring gene STARR-seq mESC enhancer starr_22284 Neighboring gene predicted gene, 19935 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93367415-93367716 Neighboring gene STARR-seq mESC enhancer starr_22288 Neighboring gene VISTA enhancer mm1483 Neighboring gene STARR-seq mESC enhancer starr_22296 Neighboring gene predicted gene 6658 Neighboring gene STARR-positive B cell enhancer ABC_E3792 Neighboring gene STARR-positive B cell enhancer ABC_E8848 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:93594488-93594671 Neighboring gene STARR-seq mESC enhancer starr_22297 Neighboring gene predicted gene, 39221 Neighboring gene predicted gene, 22428 Neighboring gene RB transcriptional corepressor like 2 Neighboring gene AKT interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Chd9 mediates highly loosened chromatin structure in growing mouse oocytes. Ooga M, et al. Biochem Biophys Res Commun, 2018 Jun 7. PMID 29665362
  2. New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes. Salomon-Kent R, et al. J Cell Physiol, 2015 Sep. PMID 25689118, Free PMC Article
  3. In vivo association of CReMM/CHD9 with promoters in osteogenic cells. Shur I, et al. J Cell Physiol, 2006 May. PMID 16419031
  4. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development. Alendar A, et al. PLoS One, 2020. PMID 32453735, Free PMC Article
  5. Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors. Marom R, et al. J Cell Physiol, 2006 Jun. PMID 16523501

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development.
    Title: Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development.
  2. a loosened chromatin structure, which is mediated by Chd9, is a prerequisite for the acquisition of totipotency after fertilization.
    Title: Chd9 mediates highly loosened chromatin structure in growing mouse oocytes.
  3. Our new findings support the role for CHD9 in chromatin regulation and association with rDNA genes, in addition to its already known function in transcription control of tissue specific genes
    Title: New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes.
  4. CReMM is a chromodomain helicase-DNA-binding protein expressed by osteoprogenitors[CReMM]
    Title: Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors.
  5. Results imply that in osteogenic cells CReMM/CHD9 selectively interacts with promoters activated in the tissue at the appropriate time of embryonic development.
    Title: In vivo association of CReMM/CHD9 with promoters in osteogenic cells.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 9
Names
ATP-dependent helicase CHD9
PPAR-alpha-interacting complex protein 320 kDa
ciprofibrate-bound protein PRIC320
peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
NP_001297459.1
NP_796198.1
XP_006530632.1
XP_006530633.1
XP_006530634.1
XP_006530635.1
XP_011246574.1
XP_011246575.1
XP_011246576.1
XP_011246577.1
XP_017168006.1
XP_017168007.1
XP_017168008.1
XP_017168009.1
XP_017168010.1
XP_030099098.1
XP_030099099.1
XP_030099100.1
XP_036009611.1
XP_036009612.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310530.1 → NP_001297459.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

    See identical proteins and their annotated locations for NP_001297459.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer isoform (1).
    Source sequence(s)
    CF532542, DQ127229
    Consensus CDS
    CCDS80912.1
    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Related
    ENSMUSP00000148088.2, ENSMUST00000209423.2
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  2. NM_177224.2 → NP_796198.1  chromodomain-helicase-DNA-binding protein 9 isoform 2

    See identical proteins and their annotated locations for NP_796198.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
    Source sequence(s)
    AK034446, DQ127229
    Consensus CDS
    CCDS22517.1
    UniProtKB/TrEMBL
    B7ZNF8
    Related
    ENSMUSP00000046356.7, ENSMUST00000048665.8
    Conserved Domains (7) summary
    smart00592
    Location:2530 → 2574
    BRK; domain in transcription and CHROMO domain helicases
    smart00298
    Location:691 → 753
    CHROMO; Chromatin organization modifier domain
    cd00046
    Location:878 → 1027
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:862 → 1149
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1181 → 1295
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:773 → 826
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam07533
    Location:2458 → 2496
    BRK; BRK domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    91554930..91781144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312517.2 → XP_017168006.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Related
    ENSMUSP00000105243.3, ENSMUST00000109614.9
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  2. XM_017312519.2 → XP_017168008.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2533 → 2577
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2459 → 2499
    BRK; BRK domain

  3. XM_006530570.4 → XP_006530633.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2545 → 2589
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2471 → 2511
    BRK; BRK domain

  4. XM_036153718.1 → XP_036009611.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2532 → 2576
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2458 → 2498
    BRK; BRK domain
    cd21577
    Location:219 → 360
    KLF3_N; N-terminal domain of Kruppel-like factor 3

  5. XM_017312520.2 → XP_017168009.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2529 → 2573
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2455 → 2495
    BRK; BRK domain

  6. XM_011248272.4 → XP_011246574.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011246574.1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  7. XM_011248273.4 → XP_011246575.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011246575.1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  8. XM_017312518.2 → XP_017168007.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  9. XM_011248274.4 → XP_011246576.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011246576.1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  10. XM_011248275.4 → XP_011246577.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011246577.1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  11. XM_006530569.4 → XP_006530632.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006530632.1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  12. XM_030243238.2 → XP_030099098.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (8) summary
    PTZ00121
    Location:510 → 765
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2546 → 2590
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:858 → 1479
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:158 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    cd18663
    Location:769 → 827
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:685 → 749
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:859 → 1080
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:2472 → 2512
    BRK; BRK domain

  13. XM_036153719.1 → XP_036009612.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (7) summary
    PTZ00121
    Location:4 → 259
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2040 → 2084
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:352 → 973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263 → 321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179 → 243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353 → 574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1966 → 2006
    BRK; BRK domain

  14. XM_006530572.4 → XP_006530635.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (7) summary
    PTZ00121
    Location:4 → 259
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2040 → 2084
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:352 → 973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263 → 321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179 → 243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353 → 574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1966 → 2006
    BRK; BRK domain

  15. XM_017312521.3 → XP_017168010.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

    Conserved Domains (6) summary
    smart00592
    Location:1954 → 1998
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:266 → 887
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:177 → 235
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:93 → 157
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:267 → 488
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1880 → 1920
    BRK; BRK domain

  16. XM_006530571.5 → XP_006530634.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (7) summary
    PTZ00121
    Location:37 → 292
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2073 → 2117
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:385 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:296 → 354
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:212 → 276
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:386 → 607
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1999 → 2039
    BRK; BRK domain

  17. XM_030243239.2 → XP_030099099.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL
    B7ZNF8
    Conserved Domains (7) summary
    PTZ00121
    Location:37 → 292
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2057 → 2101
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:385 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:296 → 354
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:212 → 276
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:386 → 607
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1983 → 2023
    BRK; BRK domain

  18. XM_030243240.2 → XP_030099100.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

    Conserved Domains (6) summary
    smart00592
    Location:1954 → 1998
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:266 → 887
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:177 → 235
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:93 → 157
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:267 → 488
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
    pfam07533
    Location:1880 → 1920
    BRK; BRK domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BYH8.2 GenPept UniProtKB/Swiss-Prot:Q8BYH8

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