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PCYB_122560 1-deoxy-D-xylulose 5-phosphate synthase [ Plasmodium cynomolgi strain B ]

Gene ID: 14694062, updated on 28-Dec-2023

Summary

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Gene symbol
PCYB_122560
Gene description
1-deoxy-D-xylulose 5-phosphate synthase
Locus tag
PCYB_122560
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium cynomolgi strain B (strain: B)
Lineage
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Sequence:
NC_020405.1 (722268..725768, complement)

NC_020405.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene exonuclease Neighboring gene CDK-related protein kinase 6 putative Neighboring gene mitochondrial intermediate peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020405.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Tachibana S, et al. Nat Genet, 2012 Sep. PMID 22863735, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
1-deoxy-D-xylulose 5-phosphate synthase
XP_004223636.1
  • putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_020405.1 Reference assembly

    Range
    722268..725768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004223588.1 → XP_004223636.1  1-deoxy-D-xylulose 5-phosphate synthase [Plasmodium cynomolgi strain B]

    See identical proteins and their annotated locations for XP_004223636.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K6UVU0
    Conserved Domains (2) summary
    cd07033
    Location:771 → 920
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    cl01629
    Location:367 → 695
    TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
Nucleotide Protein
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