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LOC158434 uncharacterized LOC158434 [ Homo sapiens (human) ]

Gene ID: 158434, updated on 10-Oct-2023

Summary

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Gene symbol
LOC158434
Gene description
uncharacterized LOC158434
See related
Ensembl:ENSG00000275465
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9q22.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (96106661..96116411, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (108278012..108287762, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98868943..98878693, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 6 like 2 Neighboring gene uncharacterized LOC105376159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98788545-98789068 Neighboring gene uncharacterized LOC158435 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98850190-98851389 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:98869639-98870212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98889065-98889595 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:98890980-98891503 Neighboring gene uncharacterized LOC112268039 Neighboring gene Sharpr-MPRA regulatory region 13927 Neighboring gene eukaryotic translation initiation factor 4B pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132344.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK055173, AL449403
    Related
    ENST00000624497.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    96106661..96116411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    108278012..108287762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001256408.1: Suppressed sequence

    Description
    NM_001256408.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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