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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001306071.1 → NP_001293000.1 integrin alpha-3 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL606480, BC053031, BQ032311
- Consensus CDS
-
CCDS83877.1
- UniProtKB/Swiss-Prot
-
Q62470
- Related
- ENSMUSP00000103368.2, ENSMUST00000107739.8
- Conserved Domains (2) summary
-
- smart00191
Location:337 → 387
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:432 → 887
- Integrin_alpha2; Integrin alpha
-
NM_001306162.1 → NP_001293091.1 integrin alpha-3 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and lacks an alternate exon the 3' coding region, compared to variant 1. It encodes isoform 3, which has a longer and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
BC096741, CJ089026
- Consensus CDS
-
CCDS83878.1
- UniProtKB/Swiss-Prot
-
Q62470
- Related
- ENSMUSP00000113556.2, ENSMUST00000120375.8
- Conserved Domains (2) summary
-
- smart00191
Location:368 → 418
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:463 → 918
- Integrin_alpha2; Integrin alpha
-
NM_013565.3 → NP_038593.1 integrin alpha-3 isoform 1 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
BC053031, BQ032311
- Consensus CDS
-
CCDS25271.1
- UniProtKB/Swiss-Prot
- Q08441, Q08442, Q5SWA8, Q5SWB9, Q62470, Q6P6I1
- Related
- ENSMUSP00000001548.8, ENSMUST00000001548.14
- Conserved Domains (2) summary
-
- smart00191
Location:368 → 418
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:463 → 918
- Integrin_alpha2; Integrin alpha
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
94935301..94967637 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006532310.5 → XP_006532373.1 integrin alpha-3 isoform X1
- UniProtKB/Swiss-Prot
-
Q62470
- Conserved Domains (2) summary
-
- smart00191
Location:368 → 418
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:463 → 918
- Integrin_alpha2; Integrin alpha
-
XM_006532311.5 → XP_006532374.1 integrin alpha-3 isoform X2
- UniProtKB/Swiss-Prot
- Q08441, Q08442, Q5SWA8, Q5SWB9, Q62470, Q6P6I1
- Conserved Domains (2) summary
-
- smart00191
Location:368 → 418
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:463 → 918
- Integrin_alpha2; Integrin alpha