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cht-1 putative endochitinase [ Caenorhabditis elegans ]

Gene ID: 180628, updated on 5-May-2024

Summary

Gene symbol
cht-1
Gene description
putative endochitinase
Primary source
WormBase:WBGene00000503
Locus tag
CELE_C04F6.3
See related
AllianceGenome:WB:WBGene00000503
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables chitinase activity. Involved in chitin catabolic process and response to fungus. Predicted to be active in extracellular region. Is expressed in gonad. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHI3L1 (chitinase 3 like 1); and CHI3L2 (chitinase 3 like 2). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (3397613..3400017, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Apyrase Neighboring gene Putative acid phosphatase 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Gag-pol polyprotein Neighboring gene Vitellogenin-5

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chitin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 
enables chitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables chitinase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in ATF6-mediated unfolded protein response HEP PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in chitin catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in chitin catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative endochitinase
NP_508588.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3397613..3400017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076187.5NP_508588.1  putative endochitinase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508588.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O17321, Q11174
    Conserved Domains (3) summary
    cd02872
    Location:55423
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00636
    Location:57399
    Glyco_18; Glyco_18 domain
    pfam01607
    Location:567615
    CBM_14; Chitin binding Peritrophin-A domain