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Rbmy RNA binding motif protein, Y chromosome [ Mus musculus (house mouse) ]

Gene ID: 19657, updated on 4-Jan-2025

Summary

Official Symbol
Rbmyprovided by MGI
Official Full Name
RNA binding motif protein, Y chromosomeprovided by MGI
Primary source
MGI:MGI:104732
See related
Ensembl:ENSMUSG00000094658 AllianceGenome:MGI:104732
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RBM; Rbm1; Rbmy1b; Rbmy1a1; Rbm1-rs1; Rbmy1a1-rs1
Summary
Predicted to enable RNA binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation. Located in male germ cell nucleus. Is expressed in central nervous system; gonad; and sensory organ. Orthologous to human RBMY1B (RNA binding motif protein Y-linked family 1 member B). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward testis adult (RPKM 1.6) See more
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Genomic context

See Rbmy in Genome Data Viewer
Location:
Y; Ypter
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (2830680..2841858)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (2830680..2841858)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member A pseudogene Neighboring gene predicted gene 8498 Neighboring gene predicted gene 8502 Neighboring gene RNA binding motif protein Y-linked family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding  
enables RNA binding  
Component Evidence Code Pubs
located_in male germ cell nucleus PubMed 
located_in nucleolus  
located_in nucleoplasm  
part_of spliceosomal complex  

General protein information

Preferred Names
RNA-binding motif protein, Y chromosome
Names
RNA binding motif protein, Y chromosome, family 1, member A1, related sequence 1
RNA-binding motif protein 1
RNA-binding motif protein, Y chromosome, family 1 member A1
RNA-binding motif protein, Y chromosome, family 1 member B
y chromosome RNA recognition motif 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166384.1NP_001159856.1  RNA-binding motif protein, Y chromosome

    See identical proteins and their annotated locations for NP_001159856.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC132601, AK016258
    Consensus CDS
    CCDS30546.1
    UniProtKB/Swiss-Prot
    E9Q856, O35698
    Related
    ENSMUSP00000130080.2, ENSMUST00000171534.8
    Conserved Domains (2) summary
    COG0724
    Location:985
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:786
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_011253.2NP_035383.2  RNA-binding motif protein, Y chromosome

    See identical proteins and their annotated locations for NP_035383.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC132601, AK016258
    Consensus CDS
    CCDS30546.1
    UniProtKB/Swiss-Prot
    E9Q856, O35698
    Related
    ENSMUSP00000097930.4, ENSMUST00000100360.5
    Conserved Domains (2) summary
    COG0724
    Location:985
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:786
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    2830680..2841858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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