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CASP16P caspase 16, pseudogene [ Homo sapiens (human) ]

Gene ID: 197350, updated on 5-Mar-2024

Summary

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Official Symbol
CASP16Pprovided by HGNC
Official Full Name
caspase 16, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:27290
See related
Ensembl:ENSG00000293410 AllianceGenome:HGNC:27290
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CASP16
Expression
Biased expression in duodenum (RPKM 7.7), small intestine (RPKM 5.2) and 2 other tissues See more
Orthologs
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Genomic context

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Location:
16p13.3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (3144291..3149946)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (3170904..3176560)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3194292..3199947)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ZNF213 antisense RNA 1 (head to head) Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:3177693-3178243 Neighboring gene Sharpr-MPRA regulatory region 2057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10304 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10305 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7119 Neighboring gene zinc finger protein 213 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3188465-3188965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7120 Neighboring gene tRNA-Arg (anticodon CCG) 1-3 Neighboring gene tRNA-Pro (anticodon AGG) 6-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Construction of an approximately 700-kb transcript map around the familial Mediterranean fever locus on human chromosome 16p13.3. Centola M, et al. Genome Res, 1998 Nov. PMID 9847080, Free PMC Article
  2. Identification of novel mammalian caspases reveals an important role of gene loss in shaping the human caspase repertoire. Eckhart L, et al. Mol Biol Evol, 2008 May. PMID 18281271
  3. The sequence and analysis of duplication-rich human chromosome 16. Martin J, et al. Nature, 2004 Dec 23. PMID 15616553
  4. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • caspase 16, apoptosis-related cysteine peptidase (putative)
  • caspase 16, apoptosis-related cysteine peptidase pseudogene
  • putative caspase-14-like pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC111724
    Related
    ENST00000428155.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    3144291..3149946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    3170904..3176560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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