U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBBP4 ubiquitin B pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 23666, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
UBBP4provided by HGNC
Official Full Name
ubiquitin B pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:12467
See related
Ensembl:ENSG00000290919 AllianceGenome:HGNC:12467
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See UBBP4 in Genome Data Viewer
Location:
17p11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (22090750..22205151)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (22756789..22866794)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (21729601..21731762)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:21561832-21562394 Neighboring gene abhydrolase domain containing 15 pseudogene Neighboring gene MPRA-validated peak2767 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr17:21532008-21532206 Neighboring gene NCOR1 pseudogene 2 Neighboring gene ferritin light chain pseudogene 13 Neighboring gene long intergenic non-protein coding RNA 2002

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. UBB pseudogene 4 encodes functional ubiquitin variants. Dubois ML, et al. Nat Commun, 2020 Mar 11. PMID 32161257, Free PMC Article
  2. Human ubiquitin genes: one member of the UbB gene subfamily is a tetrameric non-processed pseudogene. Cowland JB, et al. FEBS Lett, 1988 Apr 11. PMID 2834222
  3. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. Webb GC, et al. Am J Hum Genet, 1990 Feb. PMID 2154095, Free PMC Article
  4. Proteomic analysis of the cullin 4B interactome using proximity-dependent biotinylation in living cells. Zhang H, et al. Proteomics, 2017 Apr. PMID 28225217
  5. Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing. Freund EC, et al. Cell Rep, 2020 May 19. PMID 32433965, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144546.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138761
    Related
    ENST00000584755.2

  2. NR_176224.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    ABBA01006765, AC138761
    Related
    ENST00000648259.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    22090750..22205151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    22756789..22866794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases