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Ankrd65 ankyrin repeat domain 65 [ Mus musculus (house mouse) ]

Gene ID: 242805, updated on 30-Apr-2024

Summary

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Official Symbol
Ankrd65provided by MGI
Official Full Name
ankyrin repeat domain 65provided by MGI
Primary source
MGI:MGI:2685285
See related
Ensembl:ENSMUSG00000078487 AllianceGenome:MGI:2685285
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45; Gm439; E230028L10Rik
Summary
Orthologous to human ANKRD65 (ankyrin repeat domain 65). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 3.2), ovary adult (RPKM 1.4) and 4 other tissues See more
Orthologs
human all
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Genomic context

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Location:
4 E2; 4 87.39 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (155875432..155884132)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (155790975..155799676)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 1 Neighboring gene predicted gene, 54273 Neighboring gene transmembrane protein 88B Neighboring gene STARR-seq mESC enhancer starr_12274 Neighboring gene mitochondrial ribosomal protein L20 Neighboring gene STARR-positive B cell enhancer ABC_E3560 Neighboring gene cyclin L2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 65

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370822.1 → NP_001357751.1  ankyrin repeat domain-containing protein 65

    Status: VALIDATED

    Source sequence(s)
    AL670236
    UniProtKB/TrEMBL
    F6YK91
    Related
    ENSMUSP00000129173.3, ENSMUST00000165000.9
    Conserved Domains (2) summary
    PHA03095
    Location:49 → 347
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:226 → 256
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    155875432..155884132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320568.3 → XP_017176057.1  ankyrin repeat domain-containing protein 65 isoform X2

    Conserved Domains (3) summary
    COG0666
    Location:22 → 144
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:33 → 63
    ANK; ANK repeat [structural motif]
    cl39094
    Location:136 → 205
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_017320567.3 → XP_017176056.1  ankyrin repeat domain-containing protein 65 isoform X1

    Conserved Domains (3) summary
    PHA03095
    Location:46 → 255
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:134 → 164
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:171 → 262
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_017320569.2 → XP_017176058.1  ankyrin repeat domain-containing protein 65 isoform X3

    Conserved Domains (3) summary
    COG0666
    Location:22 → 144
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:33 → 63
    ANK; ANK repeat [structural motif]
    cl39094
    Location:136 → 205
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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