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Cetn1 centrin 1 [ Mus musculus (house mouse) ]

Gene ID: 26369, updated on 12-May-2024

Summary

Official Symbol
Cetn1provided by MGI
Official Full Name
centrin 1provided by MGI
Primary source
MGI:MGI:1347086
See related
Ensembl:ENSMUSG00000050996 AllianceGenome:MGI:1347086
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
caltractin
Summary
Enables G-protein beta/gamma-subunit complex binding activity; heterotrimeric G-protein binding activity; and microtubule binding activity. Acts upstream of or within cellular response to heat. Located in centrosome and photoreceptor connecting cilium. Is expressed in embryo; inner cell mass; and photoreceptor layer. Orthologous to human CETN1 (centrin 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See Cetn1 in Genome Data Viewer
Location:
18 A1; 18 4.91 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (9618419..9619469, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (9618419..9619469, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 pseudogene Neighboring gene STARR-seq mESC enhancer starr_43779 Neighboring gene STARR-seq mESC enhancer starr_43780 Neighboring gene predicted gene, 46616 Neighboring gene STARR-seq mESC enhancer starr_43781 Neighboring gene kinectin 1 pseudogene Neighboring gene 60S ribosomal protein L24-like Neighboring gene collectin sub-family member 12

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G-protein beta/gamma-subunit complex binding IDA
Inferred from Direct Assay
more info
PubMed 
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables heterotrimeric G-protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables microtubule binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to heat IDA
Inferred from Direct Assay
more info
PubMed 
involved_in centriole replication IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in centriole IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in centriole ISO
Inferred from Sequence Orthology
more info
PubMed 
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in cilium TAS
Traceable Author Statement
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in microtubule organizing center IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in photoreceptor connecting cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in spindle pole ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
centrin-1
Names
testis-specific murine centrin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007593.5NP_031619.3  centrin-1

    See identical proteins and their annotated locations for NP_031619.3

    Status: VALIDATED

    Source sequence(s)
    AK006940, AK015808
    Consensus CDS
    CCDS37731.1
    UniProtKB/Swiss-Prot
    P41209, Q3V119, Q9D9G9, Q9DAL6
    Related
    ENSMUSP00000157153.2, ENSMUST00000234003.2
    Conserved Domains (1) summary
    PTZ00183
    Location:15172
    PTZ00183; centrin; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    9618419..9619469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)