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Muc15 mucin 15 [ Mus musculus (house mouse) ]

Gene ID: 269328, updated on 12-May-2024

Summary

Official Symbol
Muc15provided by MGI
Official Full Name
mucin 15provided by MGI
Primary source
MGI:MGI:2442110
See related
Ensembl:ENSMUSG00000050808 AllianceGenome:MGI:2442110
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MUC-15; 4732460E09; D730046L02Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in reproductive system. Orthologous to human MUC15 (mucin 15, cell surface associated). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 52.9) See more
Orthologs
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Genomic context

See Muc15 in Genome Data Viewer
Location:
2 E3; 2 56.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (110551839..110569882)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (110721494..110739537)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05369 Neighboring gene STARR-seq mESC enhancer starr_05370 Neighboring gene ribosomal protein S3A pseudogene Neighboring gene STARR-seq mESC enhancer starr_05371 Neighboring gene STARR-seq mESC enhancer starr_05372 Neighboring gene solute carrier family 5 (sodium/glucose cotransporter), member 12 Neighboring gene predicted gene, 52522 Neighboring gene anoctamin 3 Neighboring gene STARR-seq mESC enhancer starr_05373 Neighboring gene POTE ankyrin domain family member 1 Neighboring gene RB1-inducible coiled-coil 1 pseudogene Neighboring gene olfactory receptor family 4 subfamily F member 52

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290786.1NP_001277715.1  mucin-15 isoform b precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AK028832, AK142590, AL731779
    Consensus CDS
    CCDS71111.1
    UniProtKB/TrEMBL
    A2AHK7, Q505K5
    Related
    ENSMUSP00000106646.3, ENSMUST00000111017.9
    Conserved Domains (1) summary
    pfam15672
    Location:23279
    Mucin15; Cell-membrane associated Mucin15
  2. NM_172979.3NP_766567.1  mucin-15 isoform a precursor

    See identical proteins and their annotated locations for NP_766567.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK028832, AK142590, AL731779
    Consensus CDS
    CCDS16513.1
    UniProtKB/Swiss-Prot
    Q3UQC4, Q6XYQ9, Q7TMH6, Q8C6Z1, Q8CE82
    UniProtKB/TrEMBL
    Q0VEM9, Q14AL4
    Related
    ENSMUSP00000106645.3, ENSMUST00000111016.9
    Conserved Domains (1) summary
    pfam15672
    Location:23331
    Mucin15; Cell-membrane associated Mucin15

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    110551839..110569882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)