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Zfp654 zinc finger protein 654 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288354, updated on 26-May-2024

Summary

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Symbol
Zfp654provided by RGD
Full Name
zinc finger protein 654provided by RGD
Primary source
RGD:1308321
See related
Ensembl:ENSRNOG00000029956 AllianceGenome:RGD:1308321
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf654; RGD1308321; AABR07033023.1
Summary
Orthologous to human ZNF654 (zinc finger protein 654). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 122.7), Thymus (RPKM 95.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp654 in Genome Data Viewer
Location:
11p12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (15947425..16011957, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (2500892..2565552, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (1831378..1895814, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit g, pseudogene 6 Neighboring gene similar to human chromosome 3 open reading frame 38 Neighboring gene RNA polymerase II, I and III subunit E, pseudogene 1 Neighboring gene CGG triplet repeat binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 654

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430768.1 → NP_001417697.1  zinc finger protein 654 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011

  2. NM_001430769.1 → NP_001417698.1  zinc finger protein 654 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    15947425..16011957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_237855.11 → XP_237855.6  zinc finger protein 654 isoform X1

    UniProtKB/TrEMBL
    D3ZMK5
    Related
    ENSRNOP00000039110.4
    Conserved Domains (2) summary
    sd00017
    Location:787 → 807
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:815 → 867
    zf-C2H2_8; C2H2-type zinc ribbon

  2. XM_063270836.1 → XP_063126906.1  zinc finger protein 654 isoform X2

  3. XM_039088760.2 → XP_038944688.1  zinc finger protein 654 isoform X2

    UniProtKB/TrEMBL
    A6K4W1
    Conserved Domains (2) summary
    sd00017
    Location:575 → 595
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd20908
    Location:332 → 401
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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