Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Galnt17provided by RGD
Official Full Name: polypeptide N-acetylgalactosaminyltransferase 17provided by RGD
Primary source: RGD:1563452
See related: Ensembl:ENSRNOG00000024435 AllianceGenome:RGD:1563452
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Wbscr17
Summary: Predicted to enable carbohydrate binding activity. Predicted to be integral component of membrane. Orthologous to human GALNT17 (polypeptide N-acetylgalactosaminyltransferase 17). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Muscle (RPKM 64.6), Uterus (RPKM 62.6) and 4 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 12q12

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	12	NC_086030.1 (30959460..31418150)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	12	NC_051347.1 (25323230..25781897)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	12	NC_005111.4 (28381879..29268457)

Chromosome 12 - NC_086030.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

BE097146 (e-PCR)
- UniSTS:244607

D12Got53 (e-PCR)
- UniSTS:111750

AU048013 (e-PCR)
- UniSTS:109959

D12Got58 (e-PCR)
- UniSTS:113296

AU048219 (e-PCR)
- UniSTS:109753

D12Rat99 (e-PCR), detects polymorphism
- UniSTS:226490

D12Got56 (e-PCR)
- UniSTS:114672

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info
enables polypeptide N-acetylgalactosaminyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein glycosylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: polypeptide N-acetylgalactosaminyltransferase 17

Names: Williams-Beuren syndrome chromosome region 17 homolog; pt-GalNAc-T; putative polypeptide N-acetylgalactosaminyltransferase-like protein 3

NP_001020283.1

EC 2.4.1.41

XP_038945146.1

EC 2.4.1.41

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025112.2 → NP_001020283.1 polypeptide N-acetylgalactosaminyltransferase 17 precursor

See identical proteins and their annotated locations for NP_001020283.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000012

UniProtKB/TrEMBL

A0A096MIV6, A0A9K3Y768, Q5CD99

Related

ENSRNOP00000067894.2, ENSRNOT00000076101.2

Conserved Domains (4) summary

cd02510
Location:155 → 454

pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

COG1216
Location:156 → 459

GT2; Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]

cd00161
Location:467 → 593

RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

pfam00652
Location:465 → 591

Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086030.1 Reference GRCr8

Range

30959460..31418150

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039089218.2 → XP_038945146.1 polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

Conserved Domains (2) summary

cd02510
Location:96 → 395

pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

cd00161
Location:408 → 534

RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...