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Tmem248 transmembrane protein 248 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288616, updated on 3-Apr-2024

Summary

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Official Symbol
Tmem248provided by RGD
Official Full Name
transmembrane protein 248provided by RGD
Primary source
RGD:1303319
See related
Ensembl:ENSRNOG00000000893 AllianceGenome:RGD:1303319
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM248 (transmembrane protein 248). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 109.2), Muscle (RPKM 99.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem248 in Genome Data Viewer
Location:
12q12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32069113..32093380, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (26430775..26457105, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (29931728..29958050, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene tRNA-yW synthesizing protein 1 homolog Neighboring gene interferon induced transmembrane protein 1, pseudogene 2 Neighboring gene Sbds, ribosome maturation factor Neighboring gene transfer RNA leucine (anticodon AAG) 19 Neighboring gene RAB guanine nucleotide exchange factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC94190

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 248
Names
UPF0458 protein C7orf42 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004204.2 → NP_001004204.1  transmembrane protein 248

    See identical proteins and their annotated locations for NP_001004204.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090318
    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A0A8L2R2J4, A6J0M4
    Related
    ENSRNOP00000055516.1, ENSRNOT00000058725.3
    Conserved Domains (1) summary
    pfam14940
    Location:10 → 257
    TMEM219; Transmembrane 219

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    32069113..32093380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271161.1 → XP_063127231.1  transmembrane protein 248 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A6J0M4

  2. XM_063271162.1 → XP_063127232.1  transmembrane protein 248 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A6J0M4

  3. XM_063271160.1 → XP_063127230.1  transmembrane protein 248 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A6J0M4

  4. XM_006249230.5 → XP_006249292.1  transmembrane protein 248 isoform X1

    See identical proteins and their annotated locations for XP_006249292.1

    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A0A8L2R2J4, A6J0M4
    Related
    ENSRNOP00000070412.2
    Conserved Domains (1) summary
    pfam14940
    Location:10 → 257
    TMEM219; Transmembrane 219

  5. XM_063271163.1 → XP_063127233.1  transmembrane protein 248 isoform X1

    UniProtKB/Swiss-Prot
    Q6AY76
    UniProtKB/TrEMBL
    A6J0M4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AY76.1 GenPept UniProtKB/Swiss-Prot:Q6AY76

Gene LinkOut

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