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Zbtb41 zinc finger and BTB domain containing 41 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289052, updated on 30-Mar-2024

Summary

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Official Symbol
Zbtb41provided by RGD
Official Full Name
zinc finger and BTB domain containing 41provided by RGD
Primary source
RGD:1560834
See related
AllianceGenome:RGD:1560834
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZBTB41 (zinc finger and BTB domain containing 41). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Expression
Biased expression in Kidney (RPKM 123.2), Brain (RPKM 103.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zbtb41 in Genome Data Viewer
Location:
13q13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (53591961..53622007)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (51042948..51065768)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (56513231..56542444)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene crumbs cell polarity complex component 1 Neighboring gene assembly factor for spindle microtubules Neighboring gene U4 spliceosomal RNA Neighboring gene coagulation factor XIII B chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 41
Names
zinc finger and BTB domain containing 41 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191670.1 → NP_001178599.1  zinc finger and BTB domain-containing protein 41

    See identical proteins and their annotated locations for NP_001178599.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000013
    UniProtKB/TrEMBL
    A6ICM4
    Conserved Domains (5) summary
    smart00225
    Location:90 → 174
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:576 → 596
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:602 → 624
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:78 → 174
    BTB; BTB/POZ domain
    pfam13465
    Location:681 → 704
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    53591961..53622007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063272091.1 → XP_063128161.1  zinc finger and BTB domain-containing protein 41 isoform X1

  2. XM_063272092.1 → XP_063128162.1  zinc finger and BTB domain-containing protein 41 isoform X1

  3. XM_063272093.1 → XP_063128163.1  zinc finger and BTB domain-containing protein 41 isoform X1

  4. XM_063272094.1 → XP_063128164.1  zinc finger and BTB domain-containing protein 41 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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