Vsig8 V-set and immunoglobulin domain containing 8 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Vsig8provided by RGD
Official Full Name: V-set and immunoglobulin domain containing 8provided by RGD
Primary source: RGD:1562464
See related: Ensembl:ENSRNOG00000008668 AllianceGenome:RGD:1562464
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1562464
Summary: Predicted to be integral component of membrane. Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Lung (RPKM 9.3), Muscle (RPKM 4.8) and 3 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 13q24

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	13	NC_086031.1 (87555533..87563720)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	13	NC_051348.1 (85023177..85031364)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	13	NC_005112.4 (90943255..90951443)

Chromosome 13 - NC_086031.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in intracellular anatomical structure	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: V-set and immunoglobulin domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105972.1 → NP_001099442.1 V-set and immunoglobulin domain-containing protein 8 precursor

See identical proteins and their annotated locations for NP_001099442.1

Status: PROVISIONAL

Source sequence(s)

CH473985

UniProtKB/TrEMBL

A6JG66, D4A7V8

Related

ENSRNOP00000011539.4, ENSRNOT00000011539.5

Conserved Domains (3) summary

smart00410
Location:36 → 141

IG_like; Immunoglobulin like

pfam07686
Location:28 → 141

V-set; Immunoglobulin V-set domain

cl11960
Location:159 → 245

Ig; Immunoglobulin domain