U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rell1 RELT-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 289635, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Rell1provided by RGD
Official Full Name
RELT-like 1provided by RGD
Primary source
RGD:1307468
See related
Ensembl:ENSRNOG00000002192 AllianceGenome:RGD:1307468
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307468
Summary
Predicted to be involved in positive regulation of p38MAPK cascade. Predicted to be located in microtubule cytoskeleton. Predicted to be active in plasma membrane. Orthologous to human RELL1 (RELT like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 59.7), Adrenal (RPKM 54.1) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Rell1 in Genome Data Viewer
Location:
14p11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (44672121..44732081)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (44318640..44378541)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (45982244..46041907)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene serine/threonine/tyrosine interacting protein, pseudogene 2 Neighboring gene uncharacterized LOC100911506 Neighboring gene similar to human chromosome 4 open reading frame 19 Neighboring gene NACHT and WD repeat domain containing 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RELT family members activate p38 and induce apoptosis by a mechanism distinct from TNFR1. Moua P, et al. Biochem Biophys Res Commun, 2017 Sep 9. PMID 28688764, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in positive regulation of p38MAPK cascade IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of p38MAPK cascade ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RELT-like protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113776.1 → NP_001107248.1  RELT-like protein 1 precursor

    See identical proteins and their annotated locations for NP_001107248.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158872
    UniProtKB/TrEMBL
    A0A096MJ67, B0BNL7
    Conserved Domains (1) summary
    pfam12606
    Location:59 → 91
    RELT; tumor necrosis factor receptor superfamily member 19

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    44672121..44732081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006250998.5 → XP_006251060.1  RELT-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006251060.1

    UniProtKB/TrEMBL
    A0A096MJ67, B0BNL7
    Related
    ENSRNOP00000068475.1
    Conserved Domains (1) summary
    pfam12606
    Location:59 → 91
    RELT; tumor necrosis factor receptor superfamily member 19

  2. XM_039091719.2 → XP_038947647.1  RELT-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A096MJ67, B0BNL7
    Conserved Domains (1) summary
    pfam12606
    Location:59 → 91
    RELT; tumor necrosis factor receptor superfamily member 19
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous