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C1h19orf47 similar to human chromosome 19 open reading frame 47 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292739, updated on 13-Apr-2024

Summary

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Official Symbol
C1h19orf47provided by RGD
Official Full Name
similar to human chromosome 19 open reading frame 47provided by RGD
Primary source
RGD:1307554
See related
Ensembl:ENSRNOG00000018408 AllianceGenome:RGD:1307554
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307554
Summary
Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C19orf47 (chromosome 19 open reading frame 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 44.9), Heart (RPKM 29.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C1h19orf47 in Genome Data Viewer
Location:
1q21
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (91971879..92010938)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (82844309..82871187)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (84361715..84388767)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 4 Neighboring gene phospholipase D family, member 3 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene AKT serine/threonine kinase 2 Neighboring gene uncharacterized LOC103691074 Neighboring gene tetratricopeptide repeat domain 9B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109664.2 → NP_001103134.1  uncharacterized protein C19orf47 homolog isoform 1

    See identical proteins and their annotated locations for NP_001103134.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A0G2JVF4, A0A8L2QDC8, A6J9D7
    Related
    ENSRNOP00000024829.4, ENSRNOT00000024829.6
    Conserved Domains (1) summary
    cd09531
    Location:34 → 98
    SAM_CS047; SAM domain of CS047 subfamily

  2. NM_001419446.1 → NP_001406375.1  uncharacterized protein C19orf47 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/Swiss-Prot
    A0JPQ7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    91971879..92010938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228572.5 → XP_006228634.2  uncharacterized protein C19orf47 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVF4
    Conserved Domains (1) summary
    cd09531
    Location:34 → 98
    SAM_CS047; SAM domain of CS047 subfamily

  2. XM_039104082.2 → XP_038960010.1  uncharacterized protein C19orf47 homolog isoform X2

    UniProtKB/TrEMBL
    A0A0G2JVF4
    Conserved Domains (2) summary
    pfam17740
    Location:93 → 383
    DUF5577; Family of unknown function (DUF5577)
    pfam18017
    Location:1 → 84
    SAM_4; SAM domain (Sterile alpha motif)

  3. XM_017588898.3 → XP_017444387.1  uncharacterized protein C19orf47 homolog isoform X3

    UniProtKB/TrEMBL
    A0A0G2JVF4
    Related
    ENSRNOP00000069464.2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0JPQ7.1 GenPept UniProtKB/Swiss-Prot:A0JPQ7

Gene LinkOut

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