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Zfp710 zinc finger protein 710 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293044, updated on 11-Apr-2024

Summary

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Official Symbol
Zfp710provided by RGD
Official Full Name
zinc finger protein 710provided by RGD
Primary source
RGD:1306491
See related
Ensembl:ENSRNOG00000014278 AllianceGenome:RGD:1306491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf710; RGD1306491
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF710 (zinc finger protein 710). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 49.1), Spleen (RPKM 47.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp710 in Genome Data Viewer
Location:
1q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (143375524..143445874)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (133966256..134036593)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (141763621..141873371)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483742 Neighboring gene uncharacterized LOC120099870 Neighboring gene actin-related protein 2/3 complex inhibitor Neighboring gene uncharacterized LOC134483743 Neighboring gene isocitrate dehydrogenase (NADP(+)) 2 Neighboring gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 710

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398728.1 → NP_001385657.1  zinc finger protein 710

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    143375524..143445874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759507.4 → XP_008757729.2  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Related
    ENSRNOP00000061568.3
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  2. XM_063284601.1 → XP_063140671.1  zinc finger protein 710 isoform X1

  3. XM_039105619.2 → XP_038961547.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  4. XM_039105622.2 → XP_038961550.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  5. XM_039105628.2 → XP_038961556.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  6. XM_039105620.2 → XP_038961548.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  7. XM_039105625.2 → XP_038961553.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  8. XM_039105626.2 → XP_038961554.1  zinc finger protein 710 isoform X1

    UniProtKB/TrEMBL
    A6JC77
    Conserved Domains (4) summary
    COG5048
    Location:417 → 594
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:348 → 402
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:298 → 318
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  9. XM_063284615.1 → XP_063140685.1  zinc finger protein 710 isoform X2

    UniProtKB/TrEMBL
    D4A0K8

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001134563.1: Suppressed sequence

    Description
    NM_001134563.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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