U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ifit1bl interferon-induced protein with tetratricopeptide repeats 1B-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 294090, updated on 13-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Ifit1blprovided by RGD
Official Full Name
interferon-induced protein with tetratricopeptide repeats 1B-likeprovided by RGD
Primary source
RGD:1304872
See related
Ensembl:ENSRNOG00000036603 AllianceGenome:RGD:1304872
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ifit1lb
Summary
Predicted to enable RNA binding activity. Predicted to be involved in defense response to virus. Predicted to be active in cytosol. Orthologous to several human genes including IFIT1B (interferon induced protein with tetratricopeptide repeats 1B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 224.6), Lung (RPKM 57.2) and 8 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ifit1bl in Genome Data Viewer
Location:
1q53
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (241535776..241580476, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (232122618..232167317, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (252914684..252959348, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene interferon-induced protein with tetratricopeptide repeats 2 Neighboring gene interferon-induced protein with tetratricopeptide repeats 3 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene interferon-induced protein with tetratricopeptide repeats 1 Neighboring gene solute carrier family 16, member 12 Neighboring gene uncharacterized LOC134485224

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interferon-induced Ifit proteins: their role in viral pathogenesis. Fensterl V, et al. J Virol, 2015 Mar. PMID 25428874, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in defense response to virus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
interferon-induced protein with tetratricopeptide repeats 1
Names
interferon-induced protein with tetratricopeptide repeats 1-like B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408749.1 → NP_001395678.1  interferon-induced protein with tetratricopeptide repeats 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6APR1
    Related
    ENSRNOP00000095786.1, ENSRNOT00000098477.1

  2. NM_001408750.1 → NP_001395679.1  interferon-induced protein with tetratricopeptide repeats 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A096MJ38
    Related
    ENSRNOP00000084509.1, ENSRNOT00000094113.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    241535776..241580476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063287425.1 → XP_063143495.1  interferon-induced protein with tetratricopeptide repeats 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6APR1

  2. XM_063287426.1 → XP_063143496.1  interferon-induced protein with tetratricopeptide repeats 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools