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Cfap100 cilia and flagella associated protein 100 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297444, updated on 5-Mar-2024

Summary

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Official Symbol
Cfap100provided by RGD
Official Full Name
cilia and flagella associated protein 100provided by RGD
Primary source
RGD:1305768
See related
Ensembl:ENSRNOG00000017959 AllianceGenome:RGD:1305768
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ccdc37; RGD1305768
Summary
Predicted to be active in ciliary basal body. Orthologous to human CFAP100 (cilia and flagella associated protein 100). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 56.3), Lung (RPKM 48.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cfap100 in Genome Data Viewer
Location:
4q34
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (124471913..124495990, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (122914693..122938994, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (122314462..122338862, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene urocanate hydratase 1 Neighboring gene uncharacterized LOC134486812 Neighboring gene ZXD family zinc finger C Neighboring gene KLF transcription factor 15 Neighboring gene uncharacterized LOC134486813

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 37; cilia- and flagella-associated protein 100
Names
coiled-coil domain containing 37

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    124471913..124495990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108742.2 → XP_038964670.1  cilia- and flagella-associated protein 100 isoform X3

    Conserved Domains (1) summary
    pfam13863
    Location:126 → 244
    DUF4200; Domain of unknown function (DUF4200)

  2. XM_039108740.2 → XP_038964668.1  cilia- and flagella-associated protein 100 isoform X1

    UniProtKB/TrEMBL
    D3ZEI2
    Conserved Domains (1) summary
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

  3. XM_017593020.3 → XP_017448509.2  cilia- and flagella-associated protein 100 isoform X2

    Conserved Domains (1) summary
    pfam13863
    Location:130 → 248
    DUF4200; Domain of unknown function (DUF4200)

  4. XM_039108741.2 → XP_038964669.1  cilia- and flagella-associated protein 100 isoform X3

    Conserved Domains (1) summary
    pfam13863
    Location:126 → 244
    DUF4200; Domain of unknown function (DUF4200)

  5. XM_039108745.2 → XP_038964673.1  cilia- and flagella-associated protein 100 isoform X6

    Conserved Domains (2) summary
    TIGR02169
    Location:123 → 443
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

  6. XM_006236886.5 → XP_006236948.2  cilia- and flagella-associated protein 100 isoform X1

    UniProtKB/TrEMBL
    D3ZEI2
    Conserved Domains (1) summary
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

  7. XM_006236885.5 → XP_006236947.2  cilia- and flagella-associated protein 100 isoform X1

    UniProtKB/TrEMBL
    D3ZEI2
    Related
    ENSRNOP00000024222.8
    Conserved Domains (1) summary
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

  8. XM_039108743.2 → XP_038964671.1  cilia- and flagella-associated protein 100 isoform X4

    Conserved Domains (2) summary
    TIGR02169
    Location:123 → 363
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

  9. XM_039108744.2 → XP_038964672.1  cilia- and flagella-associated protein 100 isoform X5

    UniProtKB/TrEMBL
    A6IB79
    Conserved Domains (1) summary
    pfam13863
    Location:63 → 181
    DUF4200; Domain of unknown function (DUF4200)

  10. XM_039108746.2 → XP_038964674.1  cilia- and flagella-associated protein 100 isoform X8

    UniProtKB/TrEMBL
    A6IB79
    Conserved Domains (1) summary
    pfam13863
    Location:14 → 66
    DUF4200; Domain of unknown function (DUF4200)

  11. XM_063286971.1 → XP_063143041.1  cilia- and flagella-associated protein 100 isoform X9

  12. XM_063286970.1 → XP_063143040.1  cilia- and flagella-associated protein 100 isoform X7

  13. XM_039108747.2 → XP_038964675.1  cilia- and flagella-associated protein 100 isoform X10

    Conserved Domains (1) summary
    pfam13863
    Location:152 → 270
    DUF4200; Domain of unknown function (DUF4200)

RNA

  1. XR_005503732.2 RNA Sequence

  2. XR_005503731.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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