Nopchap1 NOP protein chaperone 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Nopchap1provided by RGD
Official Full Name: NOP protein chaperone 1provided by RGD
Primary source: RGD:1563365
See related: Ensembl:ENSRNOG00000008696 AllianceGenome:RGD:1563365
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1563365
Summary: Predicted to enable box C/D snoRNP complex binding activity. Predicted to be involved in box C/D snoRNP assembly. Orthologous to human NOPCHAP1 (NOP protein chaperone 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Thymus (RPKM 80.7), Adrenal (RPKM 71.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q13

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (22241236..22247150, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (20353626..20359685, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (26472288..26478189, complement)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BI274448 (e-PCR)
- UniSTS:249089

RH140814 (e-PCR)
- UniSTS:222880

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables box C/D methylation guide snoRNP complex binding	IBA Inferred from Biological aspect of Ancestor more info
enables box C/D methylation guide snoRNP complex binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in box C/D snoRNP assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in box C/D snoRNP assembly	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: NOP protein chaperone 1

Names: uncharacterized protein C12orf45 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.