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Mgat4c MGAT4 family, member C [ Rattus norvegicus (Norway rat) ]

Gene ID: 299756, updated on 3-Apr-2024

Summary

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Official Symbol
Mgat4cprovided by RGD
Official Full Name
MGAT4 family, member Cprovided by RGD
Primary source
RGD:1307871
See related
Ensembl:ENSRNOG00000004149 AllianceGenome:RGD:1307871
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307871
Summary
Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 42.8), Testes (RPKM 22.0) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Mgat4c in Genome Data Viewer
Location:
7q21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (38596117..39361103)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (36709564..37485810)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (43249369..44024278)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S13, pseudogene 9 Neighboring gene uncharacterized LOC120093573 Neighboring gene arginine and serine rich coiled-coil 1, pseudogene 1 Neighboring gene uncharacterized LOC134479677 Neighboring gene uncharacterized LOC134479676 Neighboring gene uncharacterized LOC100910482 Neighboring gene neurotensin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in protein N-linked glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Names
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
NP_001129286.1
XP_017450226.2
XP_038934627.1
XP_038934628.1
XP_038934630.1
XP_063119276.1
XP_063119277.1
XP_063119278.1
XP_063119279.1
XP_063119280.1
XP_063119281.1
XP_063119282.1
XP_063119284.1
XP_063119285.1
XP_063119286.1
XP_063119287.1
XP_063119288.1
XP_063119289.1
XP_063119290.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135814.1 → NP_001129286.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    See identical proteins and their annotated locations for NP_001129286.1

    Status: INFERRED

    Source sequence(s)
    CH473960
    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3
    Related
    ENSRNOP00000005523.8, ENSRNOT00000005523.8
    Conserved Domains (1) summary
    pfam04666
    Location:64 → 330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    38596117..39361103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039078699.2 → XP_038934627.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3
    Conserved Domains (1) summary
    pfam04666
    Location:64 → 330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  2. XM_063263216.1 → XP_063119286.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  3. XM_017594737.3 → XP_017450226.2  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3
    Conserved Domains (1) summary
    pfam04666
    Location:64 → 330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  4. XM_039078702.2 → XP_038934630.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    Conserved Domains (1) summary
    cl04660
    Location:64 → 269
    PGAP4-like; Post-GPI attachment to proteins factor 4 and similar proteins

  5. XM_063263212.1 → XP_063119282.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  6. XM_063263211.1 → XP_063119281.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  7. XM_063263210.1 → XP_063119280.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  8. XM_063263209.1 → XP_063119279.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  9. XM_063263208.1 → XP_063119278.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  10. XM_063263215.1 → XP_063119285.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  11. XM_039078700.2 → XP_038934628.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3
    Conserved Domains (1) summary
    pfam04666
    Location:64 → 330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  12. XM_063263214.1 → XP_063119284.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  13. XM_063263207.1 → XP_063119277.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  14. XM_063263217.1 → XP_063119287.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  15. XM_063263218.1 → XP_063119288.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

  16. XM_063263206.1 → XP_063119276.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    UniProtKB/TrEMBL
    A6IGA6, D3ZEV3

  17. XM_063263220.1 → XP_063119290.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X3

  18. XM_063263219.1 → XP_063119289.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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