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Glipr1 GLI pathogenesis-related 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 299783, updated on 22-Mar-2024

Summary

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Official Symbol
Glipr1provided by RGD
Official Full Name
GLI pathogenesis-related 1provided by RGD
Primary source
RGD:1305978
See related
Ensembl:ENSRNOG00000026644 Ensembl:ENSRNOG00000065717 AllianceGenome:RGD:1305978
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human GLIPR1 (GLI pathogenesis related 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 375.8), Thymus (RPKM 330.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Glipr1 in Genome Data Viewer
Location:
7q22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (49373579..49399190, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (47487342..47498974, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (54767828..54778823, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351449 Neighboring gene uncharacterized LOC120093587 Neighboring gene uncharacterized LOC108351450 Neighboring gene KRR1, small subunit processome component homolog Neighboring gene GLIPR1 like 2 Neighboring gene GLIPR1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC108941

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glioma pathogenesis-related protein 1
Names
GLI pathogenesis-related 1 (glioma)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011987.1 → NP_001011987.1  glioma pathogenesis-related protein 1 precursor

    See identical proteins and their annotated locations for NP_001011987.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089858
    UniProtKB/TrEMBL
    A0A8I5ZNI3, A6IGI2, F7EQZ0, Q5FVN7
    Related
    ENSRNOP00000005399.4, ENSRNOT00000005399.8
    Conserved Domains (1) summary
    cl00133
    Location:32 → 168
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    49373579..49399190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039078708.2 → XP_038934636.1  glioma pathogenesis-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZNI3, A6IGI2, F7EQZ0, Q5FVN7
    Conserved Domains (1) summary
    cl00133
    Location:32 → 168
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

  2. XM_039078709.2 → XP_038934637.1  glioma pathogenesis-related protein 1 isoform X2

    Conserved Domains (1) summary
    cl00133
    Location:32 → 167
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

RNA

  1. XR_010052953.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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