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Ccdc159 coiled-coil domain containing 159 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300442, updated on 13-Apr-2024

Summary

Official Symbol
Ccdc159provided by RGD
Official Full Name
coiled-coil domain containing 159provided by RGD
Primary source
RGD:1308031
See related
Ensembl:ENSRNOG00000011799 AllianceGenome:RGD:1308031
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308031
Summary
Orthologous to human CCDC159 (coiled-coil domain containing 159). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 83.2), Adrenal (RPKM 36.6) and 9 other tissues See more
Orthologs
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Genomic context

See Ccdc159 in Genome Data Viewer
Location:
8q13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (28733988..28742646)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20457905..20467232)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (22937962..22946648)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene RAB3D, member RAS oncogene family Neighboring gene transmembrane protein 205 Neighboring gene phospholipid phosphatase related 2 Neighboring gene SWIM-type zinc finger 7 associated protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
coiled-coil domain-containing protein 159

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001371565.1NP_001358494.1  coiled-coil domain-containing protein 159

    Status: VALIDATED

    Source sequence(s)
    BC088314, JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A0G2JTP2, A6JNW0
    Related
    ENSRNOP00000068788.2, ENSRNOT00000088255.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    28733988..28742646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006242678.5XP_006242740.1  coiled-coil domain-containing protein 159 isoform X1

    See identical proteins and their annotated locations for XP_006242740.1

    Conserved Domains (1) summary
    COG0419
    Location:146313
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
  2. XM_006242680.5XP_006242742.1  coiled-coil domain-containing protein 159 isoform X3

    See identical proteins and their annotated locations for XP_006242742.1

    UniProtKB/TrEMBL
    F7FD89
    Related
    ENSRNOP00000040215.4
    Conserved Domains (1) summary
    COG0419
    Location:136303
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
  3. XM_063265048.1XP_063121118.1  coiled-coil domain-containing protein 159 isoform X6

  4. XM_006242679.5XP_006242741.1  coiled-coil domain-containing protein 159 isoform X2

    See identical proteins and their annotated locations for XP_006242741.1

    Conserved Domains (1) summary
    COG0419
    Location:145312
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
  5. XM_063265047.1XP_063121117.1  coiled-coil domain-containing protein 159 isoform X5

  6. XM_006242681.5XP_006242743.1  coiled-coil domain-containing protein 159 isoform X4

    See identical proteins and their annotated locations for XP_006242743.1

    Conserved Domains (1) summary
    COG0419
    Location:135302
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
  7. XM_063265049.1XP_063121119.1  coiled-coil domain-containing protein 159 isoform X7

  8. XM_063265051.1XP_063121121.1  coiled-coil domain-containing protein 159 isoform X12

    UniProtKB/TrEMBL
    A0A8I6A3K5
  9. XM_039081007.2XP_038936935.1  coiled-coil domain-containing protein 159 isoform X10

    Related
    ENSRNOP00000087027.1
  10. XM_063265050.1XP_063121120.1  coiled-coil domain-containing protein 159 isoform X11

  11. XM_006242686.5XP_006242748.1  coiled-coil domain-containing protein 159 isoform X9

    See identical proteins and their annotated locations for XP_006242748.1

  12. XM_039081006.2XP_038936934.1  coiled-coil domain-containing protein 159 isoform X8

  13. XM_039081005.2XP_038936933.1  coiled-coil domain-containing protein 159 isoform X8

  14. XM_063265052.1XP_063121122.1  coiled-coil domain-containing protein 159 isoform X13

    UniProtKB/TrEMBL
    Q5M816

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001009667.1: Suppressed sequence

    Description
    NM_001009667.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from mouse, laboratory: Ccdc159 (GeneID:67119).