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Snx22 sorting nexin 22 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300796, updated on 30-Mar-2024

Summary

Official Symbol
Snx22provided by RGD
Official Full Name
sorting nexin 22provided by RGD
Primary source
RGD:1305042
See related
Ensembl:ENSRNOG00000022852 AllianceGenome:RGD:1305042
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable phosphatidylinositol phosphate binding activity. Orthologous to human SNX22 (sorting nexin 22). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Liver (RPKM 197.5), Spleen (RPKM 158.5) and 9 other tissues See more
Orthologs
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Genomic context

See Snx22 in Genome Data Viewer
Location:
8q24
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (75503297..75509271, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (66609914..66612932, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (71725405..71728729, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene U6 spliceosomal RNA Neighboring gene PCNA clamp associated factor Neighboring gene casein kinase 1, gamma 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene peptidylprolyl isomerase B Neighboring gene sorting nexin 1 Neighboring gene cytosolic iron-sulfur assembly component 2A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106832.2NP_001100302.2  sorting nexin-22

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    Conserved Domains (1) summary
    cd06880
    Location:2116
    PX_SNX22; The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    75503297..75509271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063265163.1XP_063121233.1  sorting nexin-22 isoform X2

  2. XM_006243305.5XP_006243367.1  sorting nexin-22 isoform X3

    UniProtKB/TrEMBL
    A0A0G2K0V0
    Related
    ENSRNOP00000071591.1
    Conserved Domains (1) summary
    cd06880
    Location:2116
    PX_SNX22; The phosphoinositide binding Phox Homology domain of Sorting Nexin 22
  3. XM_006243304.5XP_006243366.1  sorting nexin-22 isoform X1

    Conserved Domains (1) summary
    cl02563
    Location:31122
    PX_domain; The Phox Homology domain, a phosphoinositide binding module