U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Bicral BICRA like chromatin remodeling complex associated protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 301235, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Bicralprovided by RGD
Official Full Name
BICRA like chromatin remodeling complex associated proteinprovided by RGD
Primary source
RGD:1305680
See related
Ensembl:ENSRNOG00000016229 AllianceGenome:RGD:1305680
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Gltscr1l; RGD1305680
Summary
Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex. Orthologous to human BICRAL (BICRA like chromatin remodeling complex associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 50.5), Spleen (RPKM 47.8) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Bicral in Genome Data Viewer
Location:
9q12
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (21597886..21682985)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (14100253..14185368)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (16406577..16495751)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene peripherin 2 Neighboring gene tubulin folding cofactor C Neighboring gene uncharacterized LOC134480555 Neighboring gene small nucleolar RNA SNORA19 Neighboring gene ribosomal protein L7-like 1 Neighboring gene smilar to human chromosome 6 open reading frame 226

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes. Alpsoy A, et al. J Biol Chem, 2018 Mar 16. PMID 29374058, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SWI/SNF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of SWI/SNF complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
BRD4-interacting chromatin-remodeling complex-associated protein-like
Names
BRD4 interacting chromatin remodeling complex associated protein like
BRD4 interacting chromatin remodelling complex associated protein like
GLTSCR1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106888.1 → NP_001100358.1  BRD4-interacting chromatin-remodeling complex-associated protein-like

    See identical proteins and their annotated locations for NP_001100358.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473987
    UniProtKB/TrEMBL
    A0A0G2K049, A6JIL7, D4A240
    Related
    ENSRNOP00000021762.5, ENSRNOT00000021762.8
    Conserved Domains (1) summary
    pfam15249
    Location:712 → 812
    GLTSCR1; Conserved region of unknown function on GLTSCR protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    21597886..21682985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039083177.2 → XP_038939105.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

    UniProtKB/TrEMBL
    A0A0G2K049, A6JIL7, D4A240
    Conserved Domains (1) summary
    pfam15249
    Location:712 → 812
    GLTSCR1; Conserved region of unknown function on GLTSCR protein

  2. XM_008766846.4 → XP_008765068.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

    See identical proteins and their annotated locations for XP_008765068.1

    UniProtKB/TrEMBL
    A0A0G2K049, A6JIL7, D4A240
    Conserved Domains (1) summary
    pfam15249
    Location:712 → 812
    GLTSCR1; Conserved region of unknown function on GLTSCR protein

  3. XM_039083178.2 → XP_038939106.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

    UniProtKB/TrEMBL
    A0A0G2K049, A6JIL7, D4A240
    Conserved Domains (1) summary
    pfam15249
    Location:712 → 812
    GLTSCR1; Conserved region of unknown function on GLTSCR protein

  4. XM_063266847.1 → XP_063122917.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

    UniProtKB/TrEMBL
    A6JIL7, D4A240

  5. XM_006244508.5 → XP_006244570.2  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

    UniProtKB/TrEMBL
    A0A0G2K049, A6JIL7, D4A240
    Conserved Domains (1) summary
    pfam15249
    Location:712 → 812
    GLTSCR1; Conserved region of unknown function on GLTSCR protein

  6. XM_063266846.1 → XP_063122916.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous