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Bicdl2 BICD family like cargo adaptor 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 302964, updated on 5-Mar-2024

Summary

Official Symbol
Bicdl2provided by RGD
Official Full Name
BICD family like cargo adaptor 2provided by RGD
Primary source
RGD:1306729
See related
Ensembl:ENSRNOG00000003457 AllianceGenome:RGD:1306729
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ccdc64b; RGD1306729
Summary
Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi to secretory granule transport and vesicle transport along microtubule. Predicted to be located in cytoplasm. Orthologous to human BICDL2 (BICD family like cargo adaptor 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 21.6), Thymus (RPKM 17.3) and 4 other tissues See more
Orthologs
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Genomic context

Location:
10q12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (13196205..13204642)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12691610..12700049)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (12980696..12989133)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene zinc finger and SCAN domain containing 10 Neighboring gene matrix metallopeptidase 25 Neighboring gene uncharacterized LOC102557038 Neighboring gene THO complex subunit 6 Neighboring gene TNF receptor superfamily member 12A Neighboring gene host cell factor C1 regulator 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables small GTPase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in Golgi to secretory granule transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vesicle transport along microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BICD family-like cargo adapter 2
Names
bicaudal D-related protein 2
coiled-coil domain containing 64B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106982.1NP_001100452.1  BICD family-like cargo adapter 2

    See identical proteins and their annotated locations for NP_001100452.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A0A8I6AM60, B1WBT3, F7FE00
    Related
    ENSRNOP00000004638.4, ENSRNOT00000004638.7
    Conserved Domains (1) summary
    cl19219
    Location:191291
    DUF342; Protein of unknown function (DUF342)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    13196205..13204642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)