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C2cd2 C2 calcium-dependent domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304055, updated on 5-Mar-2024

Summary

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Official Symbol
C2cd2provided by RGD
Official Full Name
C2 calcium-dependent domain containing 2provided by RGD
Primary source
RGD:735112
See related
Ensembl:ENSRNOG00000001621 AllianceGenome:RGD:735112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD735112
Summary
Predicted to be integral component of membrane. Orthologous to human C2CD2 (C2 calcium dependent domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 116.3), Liver (RPKM 109.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
11q12
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (50694680..50759096, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (37225321..37289741, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (38354746..38420133, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene receptor-interacting serine-threonine kinase 4 Neighboring gene PR/SET domain 15 Neighboring gene uncharacterized LOC134480980 Neighboring gene ribosomal protein S17, pseudogene 5 Neighboring gene zinc finger and BTB domain containing 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. Hu YH, et al. BMC Genomics, 2006 Jun 16. PMID 16780588, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC72630

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C2 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199391.1 → NP_955423.1  C2 domain-containing protein 2

    See identical proteins and their annotated locations for NP_955423.1

    Status: PROVISIONAL

    Source sequence(s)
    BC062389
    UniProtKB/TrEMBL
    A0A8I5ZML0, A6IQH6, F7F9E0, Q6P691
    Related
    ENSRNOP00000002209.4, ENSRNOT00000002209.6
    Conserved Domains (2) summary
    pfam18696
    Location:71 → 223
    SMP_C2CD2L; Synaptotagmin-like, mitochondrial and lipid-binding domain
    cl14603
    Location:261 → 386
    C2; C2 domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    50694680..50759096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008768573.4 → XP_008766795.1  C2 domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:259 → 384
    C2; C2 domain

  2. XM_008768572.4 → XP_008766794.1  C2 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:260 → 385
    C2; C2 domain

  3. XM_017598013.3 → XP_017453502.1  C2 domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A0G2JU40
    Related
    ENSRNOP00000068956.2

  4. XM_039088396.2 → XP_038944324.1  C2 domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (2) summary
    pfam18696
    Location:71 → 190
    SMP_C2CD2L; Synaptotagmin-like, mitochondrial and lipid-binding domain
    cl14603
    Location:228 → 353
    C2; C2 domain

  5. XM_008768577.3 → XP_008766799.1  C2 domain-containing protein 2 isoform X7

    See identical proteins and their annotated locations for XP_008766799.1

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:141 → 266
    C2; C2 domain

  6. XM_008768576.4 → XP_008766798.1  C2 domain-containing protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:183 → 308
    C2; C2 domain

  7. XM_008768578.3 → XP_008766800.1  C2 domain-containing protein 2 isoform X7

    See identical proteins and their annotated locations for XP_008766800.1

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:141 → 266
    C2; C2 domain

  8. XM_017598014.3 → XP_017453503.1  C2 domain-containing protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A8I5ZML0
    Conserved Domains (1) summary
    cl14603
    Location:183 → 308
    C2; C2 domain

  9. XM_039088398.2 → XP_038944326.1  C2 domain-containing protein 2 isoform X8

    Conserved Domains (1) summary
    cl14603
    Location:89 → 214
    C2; C2 domain

  10. XM_039088395.2 → XP_038944323.1  C2 domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JU40
    Conserved Domains (2) summary
    pfam18696
    Location:71 → 223
    SMP_C2CD2L; Synaptotagmin-like, mitochondrial and lipid-binding domain
    cl14603
    Location:261 → 386
    C2; C2 domain

RNA

  1. XR_010055959.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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