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Bach1 BTB domain and CNC homolog 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304127, updated on 5-Mar-2024

Summary

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Symbol
Bach1provided by RGD
Full Name
BTB domain and CNC homolog 1provided by RGD
Primary source
RGD:1306693
See related
Ensembl:ENSRNOG00000001582 AllianceGenome:RGD:1306693
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription repressor activity, RNA polymerase II-specific; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in DNA repair and regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human BACH1 (BTB domain and CNC homolog 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 320.9), Spleen (RPKM 123.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
11q11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (40425721..40461118)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (26939429..26974876)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (27364913..27398713)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555219 Neighboring gene uncharacterized LOC134480966 Neighboring gene uncharacterized LOC102554346 Neighboring gene NADH:ubiquinone oxidoreductase subunit A7, pseudogene 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene glutamate ionotropic receptor kainate type subunit 1 Neighboring gene sorting nexin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. BACH1 promotes intervertebral disc degeneration by regulating HMOX1/GPX4 to mediate oxidative stress, ferroptosis, and lipid metabolism in nucleus pulposus cells. Yao B, et al. J Gene Med, 2023 Jun. PMID 36813742
  2. Dynamic changes in Bach1 expression in the kidney of rhabdomyolysis-associated acute kidney injury. Yamaoka M, et al. PLoS One, 2017. PMID 28704479, Free PMC Article
  3. Bach1 modulates AKT3 transcription to participate in hyperglycaemia-mediated EndMT in vascular endothelial cells. Meng Z, et al. Clin Exp Pharmacol Physiol, 2023 Jun. PMID 36752556
  4. Crystal structure of the Bach1 BTB domain and its regulation of homodimerization. Ito N, et al. Genes Cells, 2009 Feb. PMID 19170764
  5. MicroRNA-532-5p upregulation protects neurological deficits after ischemic stroke through inhibition of BTB and CNC homology 1. Wang J, et al. Int Immunopharmacol, 2021 Nov. PMID 34464885

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. BACH1 promotes intervertebral disc degeneration by regulating HMOX1/GPX4 to mediate oxidative stress, ferroptosis, and lipid metabolism in nucleus pulposus cells.
    Title: BACH1 promotes intervertebral disc degeneration by regulating HMOX1/GPX4 to mediate oxidative stress, ferroptosis, and lipid metabolism in nucleus pulposus cells.
  2. Bach1 modulates AKT3 transcription to participate in hyperglycaemia-mediated EndMT in vascular endothelial cells.
    Title: Bach1 modulates AKT3 transcription to participate in hyperglycaemia-mediated EndMT in vascular endothelial cells.
  3. MicroRNA-532-5p upregulation protects neurological deficits after ischemic stroke through inhibition of BTB and CNC homology 1.
    Title: MicroRNA-532-5p upregulation protects neurological deficits after ischemic stroke through inhibition of BTB and CNC homology 1.
  4. Findings suggest that the increase in Bach1 mRNA and cytosolic Bach1 protein expression may reflect de novo Bach1 protein synthesis to compensate for the depletion of nuclear Bach1 protein caused by the induction of HO-1 by free heme in rat model of rhabdomyolysis-associated acute kidney injury.
    Title: Dynamic changes in Bach1 expression in the kidney of rhabdomyolysis-associated acute kidney injury.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
  
enables DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription repressor activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables ligand-activated transcription factor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in DNA repair ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
transcription regulator protein BACH1
Names
BTB and CNC homology 1 transcription factor
BTB and CNC homology 1, basic leucine zipper transcription factor 1
transcription regulator protein BACH1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107113.1 → NP_001100583.1  transcription regulator protein BACH1

    See identical proteins and their annotated locations for NP_001100583.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473989
    UniProtKB/TrEMBL
    A6JL80, D4ACD2
    Related
    ENSRNOP00000002151.4, ENSRNOT00000002151.7
    Conserved Domains (2) summary
    cd14719
    Location:554 → 624
    bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
    cd18277
    Location:7 → 126
    BTB_POZ_BACH1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB and CNC homolog 1 (BACH1)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    40425721..40461118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598018.3 → XP_017453507.1  transcription regulator protein BACH1 isoform X1

    UniProtKB/TrEMBL
    A6JL80, D4ACD2
    Conserved Domains (2) summary
    cd14719
    Location:554 → 624
    bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
    cd18277
    Location:7 → 126
    BTB_POZ_BACH1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB and CNC homolog 1 (BACH1)

  2. XM_039088437.2 → XP_038944365.1  transcription regulator protein BACH1 isoform X1

    UniProtKB/TrEMBL
    A6JL80, D4ACD2
    Conserved Domains (2) summary
    cd14719
    Location:554 → 624
    bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
    cd18277
    Location:7 → 126
    BTB_POZ_BACH1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB and CNC homolog 1 (BACH1)

  3. XM_063270599.1 → XP_063126669.1  transcription regulator protein BACH1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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