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Cfap99 cilia and flagella associated protein 99 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305453, updated on 3-Apr-2024

Summary

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Official Symbol
Cfap99provided by RGD
Official Full Name
cilia and flagella associated protein 99provided by RGD
Primary source
RGD:1564567
See related
Ensembl:ENSRNOG00000058434 AllianceGenome:RGD:1564567
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564567
Summary
Orthologous to human CFAP99 (cilia and flagella associated protein 99). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 34.2), Testes (RPKM 21.7) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
14q21
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (80625864..80692753, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (76423923..76468170, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (81685428..81725165, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 193, member A Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC103693090 Neighboring gene ring finger protein 4 Neighboring gene zinc finger FYVE-type containing 28 Neighboring gene Max dimerization protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cilia- and flagella-associated protein 99

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    80625864..80692753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273837.1 → XP_063129907.1  cilia- and flagella-associated protein 99 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7Q4

  2. XM_063273836.1 → XP_063129906.1  cilia- and flagella-associated protein 99 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7Q4

  3. XM_008770377.4 → XP_008768599.1  cilia- and flagella-associated protein 99 isoform X1

    See identical proteins and their annotated locations for XP_008768599.1

    UniProtKB/TrEMBL
    A0A8I6A7Q4
    Related
    ENSRNOP00000089012.1
    Conserved Domains (1) summary
    COG1196
    Location:313 → 639
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_063273835.1 → XP_063129905.1  cilia- and flagella-associated protein 99 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7Q4

  5. XM_063273839.1 → XP_063129909.1  cilia- and flagella-associated protein 99 isoform X3

  6. XM_017599504.3 → XP_017454993.1  cilia- and flagella-associated protein 99 isoform X4

  7. XM_017599503.3 → XP_017454992.1  cilia- and flagella-associated protein 99 isoform X4

  8. XM_039092829.2 → XP_038948757.1  cilia- and flagella-associated protein 99 isoform X5

    Conserved Domains (1) summary
    COG1196
    Location:159 → 485
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_063273838.1 → XP_063129908.1  cilia- and flagella-associated protein 99 isoform X2

    UniProtKB/TrEMBL
    A0A0G2K347

  10. XM_039092827.2 → XP_038948755.1  cilia- and flagella-associated protein 99 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7Q4
    Conserved Domains (1) summary
    COG1196
    Location:313 → 639
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  11. XM_039092828.2 → XP_038948756.1  cilia- and flagella-associated protein 99 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:276 → 602
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  12. XM_017599502.3 → XP_017454991.1  cilia- and flagella-associated protein 99 isoform X2

    UniProtKB/TrEMBL
    A0A0G2K347
    Related
    ENSRNOP00000072499.2
    Conserved Domains (1) summary
    COG1196
    Location:282 → 608
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  13. XM_039092833.2 → XP_038948761.1  cilia- and flagella-associated protein 99 isoform X6

    Conserved Domains (2) summary
    PTZ00121
    Location:234 → 428
    PTZ00121; MAEBL; Provisional
    pfam02841
    Location:359 → 436
    GBP_C; Guanylate-binding protein, C-terminal domain

  14. XM_063273840.1 → XP_063129910.1  cilia- and flagella-associated protein 99 isoform X7

  15. XM_039092834.2 → XP_038948762.1  cilia- and flagella-associated protein 99 isoform X7

Nucleotide Protein Strain
Heading Accession and Version

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