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Zmym5 zinc finger MYM-type containing 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305911, updated on 3-Apr-2024

Summary

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Official Symbol
Zmym5provided by RGD
Official Full Name
zinc finger MYM-type containing 5provided by RGD
Primary source
RGD:1306353
See related
Ensembl:ENSRNOG00000029220 AllianceGenome:RGD:1306353
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306353
Summary
Predicted to enable zinc ion binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Orthologous to human ZMYM5 (zinc finger MYM-type containing 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 163.6), Thymus (RPKM 152.2) and 9 other tissues See more
Orthologs
human all
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Genomic context

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Location:
15p12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (35036226..35056842, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (30920479..30941249, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (37039481..37061958, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA5 Neighboring gene M-phase phosphoprotein 8 Neighboring gene paraspeckle component 1 Neighboring gene ribosomal protein L39, pseudogene 4 Neighboring gene ribosomal protein L26, pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Analysis of transcriptional modulation of the presenilin 1 gene promoter by ZNF237, a candidate binding partner of the Ets transcription factor ERM. Pastorcic M, et al. Brain Res, 2007 Jan 12. PMID 17126306, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
zinc finger MYM-type protein 5
Names
zinc finger, MYM-type 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    35036226..35056842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093849.2 → XP_038949777.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0
    Related
    ENSRNOP00000041172.3
    Conserved Domains (3) summary
    smart00597
    Location:529 → 596
    ZnF_TTF; zinc finger in transposases and transcription factors
    smart00746
    Location:214 → 250
    TRASH; metallochaperone-like domain
    pfam06467
    Location:344 → 382
    zf-FCS; MYM-type Zinc finger with FCS sequence motif

  2. XM_039093850.2 → XP_038949778.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0
    Conserved Domains (3) summary
    smart00597
    Location:529 → 596
    ZnF_TTF; zinc finger in transposases and transcription factors
    smart00746
    Location:214 → 250
    TRASH; metallochaperone-like domain
    pfam06467
    Location:344 → 382
    zf-FCS; MYM-type Zinc finger with FCS sequence motif

  3. XM_039093852.2 → XP_038949780.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0
    Conserved Domains (3) summary
    smart00597
    Location:529 → 596
    ZnF_TTF; zinc finger in transposases and transcription factors
    smart00746
    Location:214 → 250
    TRASH; metallochaperone-like domain
    pfam06467
    Location:344 → 382
    zf-FCS; MYM-type Zinc finger with FCS sequence motif

  4. XM_063274864.1 → XP_063130934.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0

  5. XM_006252083.5 → XP_006252145.1  zinc finger MYM-type protein 5

    See identical proteins and their annotated locations for XP_006252145.1

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0
    Conserved Domains (3) summary
    smart00597
    Location:529 → 596
    ZnF_TTF; zinc finger in transposases and transcription factors
    smart00746
    Location:214 → 250
    TRASH; metallochaperone-like domain
    pfam06467
    Location:344 → 382
    zf-FCS; MYM-type Zinc finger with FCS sequence motif

  6. XM_063274865.1 → XP_063130935.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0

  7. XM_063274866.1 → XP_063130936.1  zinc finger MYM-type protein 5

    UniProtKB/TrEMBL
    A6KHA6, D3ZPX0
Nucleotide Protein Strain
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