Wdr27 WD repeat domain 27 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Wdr27provided by RGD
Full Name: WD repeat domain 27provided by RGD
Primary source: RGD:1309633
See related: Ensembl:ENSRNOG00000015609 AllianceGenome:RGD:1309633
Gene type: protein coding
RefSeq status: MODEL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1309633
Summary: Predicted to be located in nucleoplasm. Orthologous to human WDR27 (WD repeat domain 27). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Testes (RPKM 44.4), Brain (RPKM 16.2) and 7 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q12

Exon count:: 29

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (64505375..64623573, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (55832240..55950457, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (56806051..56949681, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

d1rat256 (e-PCR)
- UniSTS:121484

RH132671 (e-PCR)
- UniSTS:215954

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: WD repeat domain 27; WD repeat-containing protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

64505375..64623573 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063280900.1 → XP_063136970.1 WD repeat-containing protein 27 isoform X12
XM_039100076.2 → XP_038956004.1 WD repeat-containing protein 27 isoform X14

Conserved Domains (2) summary

sd00039
Location:278 → 314

7WD40; WD40 repeat [structural motif]

cl29593
Location:278 → 585

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_063280899.1 → XP_063136969.1 WD repeat-containing protein 27 isoform X11
XM_063280901.1 → XP_063136971.1 WD repeat-containing protein 27 isoform X13
XM_063280896.1 → XP_063136966.1 WD repeat-containing protein 27 isoform X7
XM_063280898.1 → XP_063136968.1 WD repeat-containing protein 27 isoform X10
XM_008758812.4 → XP_008757034.1 WD repeat-containing protein 27 isoform X6

See identical proteins and their annotated locations for XP_008757034.1

UniProtKB/TrEMBL

A0A8L2QBP9

Related

ENSRNOP00000020889.5

Conserved Domains (2) summary

sd00039
Location:439 → 475

7WD40; WD40 repeat [structural motif]

cl29593
Location:439 → 746

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_063280895.1 → XP_063136965.1 WD repeat-containing protein 27 isoform X6

UniProtKB/TrEMBL

A0A8L2QBP9
XM_063280892.1 → XP_063136962.1 WD repeat-containing protein 27 isoform X1

UniProtKB/TrEMBL

F1M8Z5
XM_063280897.1 → XP_063136967.1 WD repeat-containing protein 27 isoform X8
XM_063280894.1 → XP_063136964.1 WD repeat-containing protein 27 isoform X5
XM_063280893.1 → XP_063136963.1 WD repeat-containing protein 27 isoform X4
XM_008758807.4 → XP_008757029.1 WD repeat-containing protein 27 isoform X1

See identical proteins and their annotated locations for XP_008757029.1

UniProtKB/TrEMBL

F1M8Z5

Related

ENSRNOP00000021141.7

Conserved Domains (2) summary

sd00039
Location:508 → 544

7WD40; WD40 repeat [structural motif]

cl29593
Location:508 → 815

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039100027.2 → XP_038955955.1 WD repeat-containing protein 27 isoform X1

UniProtKB/TrEMBL

F1M8Z5

Conserved Domains (2) summary

sd00039
Location:508 → 544

7WD40; WD40 repeat [structural motif]

cl29593
Location:508 → 815

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_008758813.4 → XP_008757035.1 WD repeat-containing protein 27 isoform X6

See identical proteins and their annotated locations for XP_008757035.1

UniProtKB/TrEMBL

A0A8L2QBP9

Conserved Domains (2) summary

sd00039
Location:439 → 475

7WD40; WD40 repeat [structural motif]

cl29593
Location:439 → 746

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_008758811.4 → XP_008757033.1 WD repeat-containing protein 27 isoform X6

See identical proteins and their annotated locations for XP_008757033.1

UniProtKB/TrEMBL

A0A8L2QBP9

Conserved Domains (2) summary

sd00039
Location:439 → 475

7WD40; WD40 repeat [structural motif]

cl29593
Location:439 → 746

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_017589899.3 → XP_017445388.1 WD repeat-containing protein 27 isoform X3

Conserved Domains (3) summary

COG2319
Location:541 → 814

WD40; WD40 repeat [General function prediction only]

sd00039
Location:507 → 543

7WD40; WD40 repeat [structural motif]

cl02567
Location:507 → 814

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039100071.2 → XP_038955999.1 WD repeat-containing protein 27 isoform X9

Conserved Domains (2) summary

sd00039
Location:67 → 112

7WD40; WD40 repeat [structural motif]

cl29593
Location:45 → 229

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039100016.2 → XP_038955944.1 WD repeat-containing protein 27 isoform X1

UniProtKB/TrEMBL

F1M8Z5

Conserved Domains (2) summary

sd00039
Location:508 → 544

7WD40; WD40 repeat [structural motif]

cl29593
Location:508 → 815

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039100031.2 → XP_038955959.1 WD repeat-containing protein 27 isoform X2

Conserved Domains (2) summary

sd00039
Location:508 → 544

7WD40; WD40 repeat [structural motif]

cl29593
Location:508 → 804

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039100059.2 → XP_038955987.1 WD repeat-containing protein 27 isoform X6

UniProtKB/TrEMBL

A0A8L2QBP9

Conserved Domains (2) summary

sd00039
Location:439 → 475

7WD40; WD40 repeat [structural motif]

cl29593
Location:439 → 746

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...