Vom2r38 vomeronasal 2 receptor, 38 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Vom2r38provided by RGD
Official Full Name: vomeronasal 2 receptor, 38provided by RGD
Primary source: RGD:1565669
See related: Ensembl:ENSRNOG00000063010 AllianceGenome:RGD:1565669
Gene type: protein coding
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1565669
Expression: Biased expression in Testes (RPKM 2.6) and Brain (RPKM 0.4) See more
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Genomic context

Location:: 1q22

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (102495159..102556706)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (93358550..93420097)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (98915864..99145996, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH130226 (e-PCR)
- UniSTS:213513

Gprc2a-rs4 (e-PCR), detects polymorphism
- UniSTS:256976

Gprc2a-rs1 (e-PCR), detects polymorphism
- UniSTS:256977

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables G protein-coupled receptor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in G protein-coupled receptor signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: vomeronasal 2 receptor 38

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001099476.1 → NP_001092946.1 vomeronasal 2 receptor 38 precursor

Status: INFERRED

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

A6JAG7, D3ZSW6

Related

ENSRNOP00000023732.8, ENSRNOT00000023732.8

Conserved Domains (4) summary

cd06365
Location:36 → 506

PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

pfam00003
Location:601 → 835

7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR

pfam01094
Location:80 → 470

ANF_receptor; Receptor family ligand binding region

pfam07562
Location:515 → 566

NCD3G; Nine Cysteines Domain of family 3 GPCR