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Bltp3a bridge-like lipid transfer protein family member 3A [ Rattus norvegicus (Norway rat) ]

Gene ID: 309637, updated on 5-Mar-2024

Summary

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Official Symbol
Bltp3aprovided by RGD
Official Full Name
bridge-like lipid transfer protein family member 3Aprovided by RGD
Primary source
RGD:1307264
See related
Ensembl:ENSRNOG00000000495 AllianceGenome:RGD:1307264
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Uhrf1bp1; RGD1307264
Summary
Predicted to enable histone deacetylase binding activity and identical protein binding activity. Orthologous to human UHRF1BP1 (UHRF1 binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 100.4), Kidney (RPKM 81.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
20p12
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (5912033..5956404)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (5910261..5954641)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (7431235..7475515)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene uncharacterized LOC134483861 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene small nuclear ribonucleoprotein polypeptide C Neighboring gene TATA-box binding protein associated factor 11 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain. Unoki M, et al. Oncogene, 2004 Oct 7. PMID 15361834
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables histone deacetylase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone deacetylase binding ISO
Inferred from Sequence Orthology
more info
  
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in late endosome ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
bridge-like lipid transfer protein family member 3A
Names
UHRF1 binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    5912033..5956404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002728921.6 → XP_002728967.3  bridge-like lipid transfer protein family member 3A isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3T8
    Related
    ENSRNOP00000076558.1, ENSRNOT00000103992.1
    Conserved Domains (1) summary
    pfam12624
    Location:5 → 89
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_039099275.1 → XP_038955203.1  bridge-like lipid transfer protein family member 3A isoform X1

    UniProtKB/TrEMBL
    A6JJN8

  3. XM_039099274.2 → XP_038955202.1  bridge-like lipid transfer protein family member 3A isoform X1

    UniProtKB/TrEMBL
    A6JJN8

  4. XM_039099276.2 → XP_038955204.1  bridge-like lipid transfer protein family member 3A isoform X3

    UniProtKB/TrEMBL
    A6JJN8

RNA

  1. XR_005497711.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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