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Zcchc9 zinc finger CCHC-type containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309986, updated on 6-Jun-2024

Summary

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Official Symbol
Zcchc9provided by RGD
Official Full Name
zinc finger CCHC-type containing 9provided by RGD
Primary source
RGD:1307450
See related
AllianceGenome:RGD:1307450
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ZCCHC9 (zinc finger CCHC-type containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 76.5), Muscle (RPKM 62.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zcchc9 in Genome Data Viewer
Location:
2q12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (24773319..24783339, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (23038156..23048249, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (20909764..20919848, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene uncharacterized LOC120100551 Neighboring gene creatine kinase, mitochondrial 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Docking motif-guided mapping of the interactome of protein phosphatase-1. Hendrickx A, et al. Chem Biol, 2009 Apr 24. PMID 19389623
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 9
Names
zinc finger, CCHC domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013156.2 → NP_001013174.1  zinc finger CCHC domain-containing protein 9

    See identical proteins and their annotated locations for NP_001013174.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A0G2K555, Q5XII6
    Conserved Domains (1) summary
    PTZ00368
    Location:130 → 229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    24773319..24783339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006231841.4 → XP_006231903.1  zinc finger CCHC domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006231903.1

    UniProtKB/TrEMBL
    A0A0G2K555, Q5XII6
    Conserved Domains (1) summary
    PTZ00368
    Location:130 → 229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

  2. XM_063281709.1 → XP_063137779.1  zinc finger CCHC domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K555, Q5XII6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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