Zswim1 zinc finger, SWIM-type containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zswim1provided by RGD
Official Full Name: zinc finger, SWIM-type containing 1provided by RGD
Primary source: RGD:1305715
See related: Ensembl:ENSRNOG00000015735 AllianceGenome:RGD:1305715
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZSWIM1 (zinc finger SWIM-type containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Kidney (RPKM 57.1), Heart (RPKM 52.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q42

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (173978442..173982159)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (153559104..153562821)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (161287884..161292466)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH133588 (e-PCR)
- UniSTS:216871

RH133111 (e-PCR)
- UniSTS:216394

BE108834 (e-PCR)
- UniSTS:247900

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: zinc finger SWIM domain-containing protein 1

Names: rCG32422-like; zinc finger, SWIM domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001398988.1 → NP_001385917.1 zinc finger SWIM domain-containing protein 1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000003

UniProtKB/TrEMBL

A6JXB9, D4ABM7

Related

ENSRNOP00000095697.1, ENSRNOT00000106851.1

Conserved Domains (1) summary

pfam04434
Location:349 → 375

SWIM; SWIM zinc finger