Urm1 ubiquitin related modifier 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Urm1provided by RGD
Official Full Name: ubiquitin related modifier 1provided by RGD
Primary source: RGD:1306599
See related: Ensembl:ENSRNOG00000064341 AllianceGenome:RGD:1306599
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1306599
Summary: Predicted to enable protein tag and sulfur carrier activity. Predicted to be involved in protein urmylation; tRNA thio-modification; and tRNA wobble uridine modification. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human URM1 (ubiquitin related modifier 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 114.5), Thymus (RPKM 97.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3p12

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (33489974..33514942)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (13100340..13117064)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (8389024..8405868)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AA942949 (e-PCR)
- UniSTS:260699

Urm1 (e-PCR), detects polymorphism
- UniSTS:527600

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables protein tag activity	IBA Inferred from Biological aspect of Ancestor more info
enables sulfur carrier activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in protein urmylation	IBA Inferred from Biological aspect of Ancestor more info
involved_in tRNA thio-modification	ISO Inferred from Sequence Orthology more info
involved_in tRNA wobble uridine modification	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ubiquitin-related modifier 1

Names: ubiquitin-related modifier 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.