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Prr15 proline rich 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 312358, updated on 5-Mar-2024

Summary

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Official Symbol
Prr15provided by RGD
Official Full Name
proline rich 15provided by RGD
Primary source
RGD:1311589
See related
Ensembl:ENSRNOG00000009564 AllianceGenome:RGD:1311589
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311589
Summary
Orthologous to human PRR15 (proline rich 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 219.2), Testes (RPKM 47.7) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Prr15 in Genome Data Viewer
Location:
4q24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (84762357..84765403)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (83432002..83435582)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (84478839..84481885)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102282 Neighboring gene chimerin 2 Neighboring gene uncharacterized LOC102553678 Neighboring gene eukaryotic translation elongation factor 1 beta 2, pseudogene 1 Neighboring gene WAS/WASL interacting protein family, member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC156783

General protein information

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Preferred Names
proline-rich protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104527.1 → NP_001097997.1  proline-rich protein 15

    See identical proteins and their annotated locations for NP_001097997.1

    Status: PROVISIONAL

    Source sequence(s)
    BC127529
    UniProtKB/TrEMBL
    A0A8I5ZQ45, A0JPP6, A6K0U8
    Related
    ENSRNOP00000080622.1, ENSRNOT00000097904.1
    Conserved Domains (1) summary
    pfam15321
    Location:14 → 106
    ATAD4; ATPase family AAA domain containing 4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    84762357..84765403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107557.2 → XP_038963485.1  proline-rich protein 15 isoform X1

    UniProtKB/TrEMBL
    A6K0U7, F7EPF1
    Related
    ENSRNOP00000012668.5
    Conserved Domains (1) summary
    pfam15321
    Location:66 → 158
    ATAD4; ATPase family AAA domain containing 4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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